Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1307 297 2e-75 >seq1307 Length=2189 Score = 297 bits (328), Expect = 2e-75 Identities = 495/715 (69%), Gaps = 23/715 (3%) Strand=Plus/Minus Query 173275 ATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 173334 || ||||| ||||| ||||||||||| || || | ||| || | || || ||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 173335 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTA 173394 || | |||||||| ||| || | || ||| | | || ||||| || || || Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 173395 GGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATC 173454 || || |||||||||| ||||| ||||| || || ||||| || || | || Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 173455 TTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCA 173514 |||||| | ||||| ||||| ||| || || || || || || |||||||||||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 173515 GGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTG 173574 || |||| || | ||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 173575 TATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTT 173634 | |||||| | ||| ||| ||| | || ||| | || ||| Sbjct 1889 TTTGAAGA------------TGGTGATGGTG-----CAAAC----ACATTCCGTGCGTTT 1851 Query 173635 GATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAG 173694 | || ||||| | |||||||||||| ||| ||||||| ||| | ||||||||||| Sbjct 1850 AACCCAACACAAGCTGAAGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAA 1791 Query 173695 ATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCT 173754 || |||||| | || |||||||||||| | | ||||||||| | ||| | || || || Sbjct 1790 ATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCA 1731 Query 173755 GTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTA-GAGC 173813 || | ||| | |||| | || ||| | |||||| | || |||| |||| | || Sbjct 1730 GTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGC-TTTAAACTTACGTGC 1672 Query 173814 ATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTA 173873 || || || || || ||||| || | || || ||||| || ||||| || |||||||| Sbjct 1671 GTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTA 1612 Query 173874 CACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACC 173933 || || ||||| ||| | || |||||||| | || |||||| | || |||||| || Sbjct 1611 TACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCC 1552 Query 173934 ACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 ||||| || | ||||| || || || || |||||| | || ||||| |||||| Sbjct 1551 TCATGAAAAACTAGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588041306038560