Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1307 437 1e-117 >seq1307 Length=2189 Score = 437 bits (484), Expect = 1e-117 Identities = 516/696 (74%), Gaps = 2/696 (0%) Strand=Plus/Minus Query 183505 ATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAAT 183564 |||||||| |||||||| ||||||||| |||| || | | | || ||||| || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 183565 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 || ||||| ||||| | ||| ||| |||| || || ||||||| | || ||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 183625 GGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTA 183684 ||||| ||| |||||||||||||| |||||||| || || ||||| || ||||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 183685 TTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCT 183744 || ||| | || || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 183745 GGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTG 183804 ||| |||| |||| |||| |||| |||| || || |||| || || || || || | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 183805 TATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAG 183864 | ||||||||| || |||||||||||| || ||| | | || |||| ||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 183865 ACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183924 || ||||| ||||||||||| || ||||||||||||||||| || || || || ||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 183925 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCT 183984 || || |||||||| |||||||||||| | |||||||| || | ||||||||| | | Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 183985 TCTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTAAGTCAAGA 184043 | ||||| | | || | ||| |||| ||| ||||| |||||||| || ||||| Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGA 1651 Query 184044 GATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAA 184103 || | || || ||||| || || ||||| || ||||| ||||| || || ||| | || Sbjct 1650 AATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAA 1591 Query 184104 TGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCC 184163 ||||| | ||||| ||| | || || ||||| || ||||| || | |||| || Sbjct 1590 CGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCC 1531 Query 184164 AGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 |||||||| ||||| | || || ||||||| ||| Sbjct 1530 TGAGGAGGTTTTACCACGTGGAAACGCTCTTTAATG 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611685708214800