Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 5e-12 seq1279 84.2 2e-11 >seq12 Length=2794402 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || || ||| ||| || || || ||||| |||| Sbjct 2342312 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2342253 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 2342252 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 2342193 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 2342192 GATGCCCTCCTTGTC 2342178 >seq1279 Length=865741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 ||| | |||||| || |||||||||||||| ||||| | || | ||| ||||| || Sbjct 224093 AAGGCCGTGTCGCCGTGGTTGAACAGCACCACGCCCACCTCGCCGCGGTAGTCCTCGTCC 224152 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 | ||| || || ||| |||||| ||||||||||| || || || || || ||||| Sbjct 224153 ACCACGCCGGCGCCCGTGTCGATAAAGTGCTTGACGGCCAGGCCCGACCGCGGCGC 224208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931350956758