Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1168 122 2e-22 seq992 93.3 8e-14 >seq1168 Length=1683484 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| |||||||| |||||| ||| ||||| || ||||||| |||||||| Sbjct 215958 TACAGCAGGCACGCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAG 215899 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || | ||||||||| Sbjct 215898 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCC 215839 Query 48242 GAGAAGAAGATGCCCTCCAC 48261 |||||||||||||||||||| Sbjct 215838 GAGAAGAAGATGCCCTCCAC 215819 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 212925 TCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTG 212984 ||||| || ||||| | | | ||| | ||| || ||||||||||||| || ||||||| Sbjct 610271 TCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTG 610330 Query 212985 TTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTC 213044 || ||||| ||||| | ||| ||| || |||||||| |||||||| || ||| | | Sbjct 610331 TTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGC 610390 Query 213045 ACTCCGTGCT 213054 || || |||| Sbjct 610391 ACGCCATGCT 610400 >seq992 Length=1576648 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38966 CTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACT 39025 |||||| | ||| || |||||||||||||| || ||| || || | ||||| || || Sbjct 1047554 CTCCCAGCGGTTTGCAGAGAAGAGCAGGTGCACCGCGGCATCATCGATCTCCGACTGGCT 1047495 Query 39026 CTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGGGAACCTCATCAG 39085 ||||| ||| |||||||||| ||||||| ||||| | ||||||||| | | ||| Sbjct 1047494 GGTAAGGTAGGAGTTGATCATCTTGCCGATGGCGGTGGTGCGGTCGGGGAAGCGCCACAG 1047435 Query 39086 CTCGGC 39091 |||||| Sbjct 1047434 CTCGGC 1047429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931517126960640