Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1168 129 1e-24 >seq1168 Length=1683484 Score = 129 bits (142), Expect = 1e-24 Identities = 136/174 (78%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| ||||||||||| ||||||| |||| |||||||||||||| ||| || || || Sbjct 215789 TTTGCTGAGCGGCTGGTCGCCTTTGCCTGC-GTGGAGGGCATCTTCTTCTCGGGCTCTTT 215847 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||| ||||||||||||||||| || || ||||||||| || ||| ||||||| Sbjct 215848 CTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 215906 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||| | |||||||| || |||| || ||||| |||||||| |||| Sbjct 215907 AGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTTGCGTGCCTGCTGTACA 215960 Score = 96.9 bits (106), Expect = 6e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 221132 TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTG 221191 || ||||| ||||| | | | ||| | ||| || ||| | || |||| || ||||||| Sbjct 610271 TCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTG 610330 Query 221192 TTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGC 221251 |||||||||||||| | ||| |||||| |||||||| ||||||||||| ||||||| Sbjct 610331 TTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGC 610390 Query 221252 A 221252 | Sbjct 610391 A 610391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829172186240