Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1307 369 4e-97 seq1039 86.0 6e-12 >seq1307 Length=2189 Score = 369 bits (408), Expect = 4e-97 Identities = 483/669 (72%), Gaps = 0/669 (0%) Strand=Plus/Minus Query 10139 ATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAAT 10198 || || |||||| | || |||||||| | ||| | | | ||| || || || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 10199 GCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTC 10258 || || || || || | || ||| |||| || || ||| ||| | || ||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 10259 GGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTT 10318 || || ||| ||||||||||||| || ||||||||||| || || |||||||| ||| || Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 10319 CTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCT 10378 | ||| |||| || || ||||| ||||| | || || |||||||||||||| ||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 10379 GGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTT 10438 ||| |||| |||| || | || | ||||| ||||| | ||||| |||||||| ||| Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 10439 TATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAG 10498 | | ||||||| || |||||||| ||| || ||| | || |||| ||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 10499 ACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC 10558 || ||||| |||||||| || |||||||||||||| || || ||||| | |||||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 10559 AATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCT 10618 || ||||| ||| | || ||||||||||| ||||| || || | |||||||||| | Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 10619 TCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAG 10678 | ||||| | | ||| | ||| | || | ||||| || ||||| || || ||||| Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACAAGAA 1650 Query 10679 ATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAAC 10738 || | || | ||||| ||||| ||||| || |||||||| || ||||| ||| | ||| Sbjct 1649 ATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAAC 1590 Query 10739 GAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCA 10798 |||||| ||||||| |||||||| | || || || || |||| | || ||||| Sbjct 1589 GAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCCT 1530 Query 10799 GAAGAAGTT 10807 || || ||| Sbjct 1529 GAGGAGGTT 1521 >seq1039 Length=107091 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| | Sbjct 50102 TCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 50043 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 50042 ATCCTGTCATCCCGA 50028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516471310224000