Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1307 459 3e-124 seq1039 89.7 6e-13 >seq1307 Length=2189 Score = 459 bits (508), Expect = 3e-124 Identities = 518/693 (75%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 162441 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTA 162496 || ||||| |||||||| ||||||||| | || || |||||| ||||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 162497 CAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCC 162556 || || ||||| ||||||| ||| ||| ||||||||||| ||| || | || ||||| Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 162557 TTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 162616 ||| || ||||| |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 162617 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGT 162676 | | | ||| ||||||| |||||||||||||| |||| ||||| || |||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 162677 AGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATAC 162736 || ||| | ||||| | ||||| || | ||| ||||| || | || |||||||| || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 162737 ACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGA 162796 || | |||||||| || |||||||| || || ||| || | ||||| | || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 162797 AGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTT 162856 |||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||| | ||||| Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 162857 TAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGAC 162916 | ||||| |||||||| || ||||||||||| |||||||| || | ||||| |||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 162917 AAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCA 162976 ||| | || ||| | | || | ||| | || | ||||| || || || || || || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 162977 AGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCT 163036 |||| |||| || || ||||||||||||||||| || ||||||||||| || |||||| | Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 163037 GAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTT 163096 || ||||| |||| || ||| | || | || || |||||||| || | || || Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 163097 CCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||| ||||| || ||| | || |||||||| Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 >seq1039 Length=107091 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 50101 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 50042 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 50041 TCCTGTCATCCCGA 50028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547737984153360