Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1307 432 5e-116 >seq1307 Length=2189 Score = 432 bits (478), Expect = 5e-116 Identities = 512/693 (74%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| || ||||| ||||| ||||| | |||||||| || ||||| Sbjct 1501 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACTAGTTTTTCATGAGGCTGATCT 1560 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || ||||| ||||| || Sbjct 1561 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 1620 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || ||||| || ||||| || || | || ||||| || || || ||||| ||||| | | Sbjct 1621 TCAAACTCAGGGTCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACGTAAG 1680 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| | ||| | | ||| || | ||| |||| ||||| | || |||||||| Sbjct 1681 TTTAAAGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACTGGAACAAAT 1740 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 ||||||||||| || ||||| | || || ||| || | |||||| ||||| |||||| Sbjct 1741 AGCATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAG 1800 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 ||||||||||||||||||||||||||||| ||||| ||||||| | | || || | Sbjct 1801 AAACGGTTTGCTGTAACCATTGAATAAGTTTCTTCAGCTTGTGTTGGGTTAAACGCACGG 1860 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || |||||||| ||||||||||||| | || ||||| || ||||| ||||||| ||| Sbjct 1861 AATGTGTTTGCACCATCACCATCTTCAAAAAGCGTGTTTTCAACAGTTGCACCGTGAATT 1920 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || | |||| |||| || | ||| |||||||||||||||||||| ||||| | Sbjct 1921 GCACAAAGTAATGCTGCTCCAAGTACACCGGCAACACCCATCATATGGAAAGGGTTTAAA 1980 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||||||||| || || | ||| | | ||||| || || || ||||| || || Sbjct 1981 GTCCAGTTATGGAATCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACGCCGAAA 2040 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| || || || | |||||| || | || ||| || || Sbjct 2041 CTTGGTGCAAAGAACCAACCAGATTGACCTAAAGGATAAATTAAGAATACAGAAACGAAT 2100 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTA--- 102366 |||| || || | ||||| ||||| || || || ||||||||| || ||| | Sbjct 2101 ACAGAAATTGGAGCTGAGAATGCAATCGCGTTATATGGACGAATT----TTTACCGAACG 2156 Query 102367 -GCCAACTCGAATTGACGAAGCATGAAACCAAT 102398 || | || || ||||||||||| |||||||| Sbjct 2157 CGCAATTTCAAACTGACGAAGCATAAAACCAAT 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633502941133680