Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1307 293 3e-74 >seq1307 Length=2189 Score = 293 bits (324), Expect = 3e-74 Identities = 492/714 (69%), Gaps = 21/714 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || || |||||||| | || ||||| || || Sbjct 1497 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACTAGTTTTTCATGAGGCTG 1556 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 1557 ATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAA 1616 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || ||||| |||||||| || || | || ||||| || || || || || || | Sbjct 1617 AGTTTCAAACTCAGGGTCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACG 1676 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| | |||| |||||| | ||| || | |||| | ||| | || ||||| Sbjct 1677 TAAGTTTAAAGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACTGGAAC 1736 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||||||||| | | |||||| ||||| || | |||||| || ||||| Sbjct 1737 AAATAGCATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGA 1796 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| ||||||| ||| |||||||||||| | ||||| || | || || Sbjct 1797 CCAGAAACGGTTTGCTGTAACCATTGAATAAGTTTCTTCAGCTTGTGTTGGGTTAAACGC 1856 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| ||| ||| | |||||| | | || Sbjct 1857 ACGGAATGT----GTTTG-----CACCATCACCA------------TCTTCAAAAAGCGT 1895 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || |||||||| ||||| ||||| ||||||||| | || |||| || ||||| Sbjct 1896 GTTTTCAACAGTTGCACCGTGAATTGCACAAAGTAATGCTGCTCCAAGTACACCGGCAAC 1955 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || || || || || || ||| ||||| ||||| | |||||| || | Sbjct 1956 ACCCATCATATGGAAAGGGTTTAAAGTCCAGTTATGGAATCCTTGGAAGAATAAAATGAA 2015 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 || || ||||| || || ||||| |||||| |||||||||| ||||||| || Sbjct 2016 TCGGAAAATTGCAGCAACGCCGAAACTTGGTGCAAAGAACCAACCAGATTGACCTAAAGG 2075 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || | || | | ||| || | || ||| |||||||| | ||||| || Sbjct 2076 ATAAATTAAGAATACAGAAACGAATACAGAAATTGGAGCTGAGAATGCAATCGCGTTATA 2135 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTAT 123579 || | ||| ||| | || || ||||| || | ||||| ||||| || Sbjct 2136 TGGACGAATTTTTACCGAACGCGCAATTTCAAACTGACGAAGCATAAAACCAAT 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578988658351920