Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1307 398 1e-105 >seq1307 Length=2189 Score = 398 bits (440), Expect = 1e-105 Identities = 463/622 (74%), Gaps = 2/622 (0%) Strand=Plus/Plus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||| || | ||||||||| || ||||| || ||| || Sbjct 1569 CATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTTTCAAACTC 1628 Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACG-AAGATTAAGAG 23577 | ||||| ||||| ||||| ||||| || |||||||| ||||| ||| |||| || Sbjct 1629 AGGGTCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCACGTAAGTTTAA-AG 1687 Query 23578 CAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAA 23637 | | || | | ||||| | | | ||||||||| | || |||||||| | ||||| Sbjct 1688 CTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACTGGAACAAATAGCATAA 1747 Query 23638 AGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGAT 23697 ||||||| |||||||| || || ||| || || || || ||||||||||| ||||| | Sbjct 1748 AGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAGAAACGGT 1807 Query 23698 TTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGT 23757 ||||||||||||| ||||| || || || | || || | | ||||| || |||| Sbjct 1808 TTGCTGTAACCATTGAATAAGTTTCTTCAGCTTGTGTTGGGTTAAACGCACGGAATGTGT 1867 Query 23758 TTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGA 23817 |||| || ||||||||| | || || || || ||||| | || ||||| ||| | | Sbjct 1868 TTGCACCATCACCATCTTCAAAAAGCGTGTTTTCAACAGTTGCACCGTGAATTGCACAAA 1927 Query 23818 GAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGT 23877 | | |||| |||| |||| ||| ||||| |||||||||||||| ||||| | ||||||| Sbjct 1928 GTAATGCTGCTCCAAGTACACCGGCAACACCCATCATATGGAAAGGGTTTAAAGTCCAGT 1987 Query 23878 TATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCG 23937 |||| || || |||| ||| | || ||| | |||||| || ||||| |||||||| || | Sbjct 1988 TATGGAATCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACGCCGAAACTTGGTG 2047 Query 23938 CAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAA 23997 ||||||||||| || || || |||||||| || | ||||||||| |||||||||| || Sbjct 2048 CAAAGAACCAACCAGATTGACCTAAAGGATAAATTAAGAATACAGAAACGAATACAGAAA 2107 Query 23998 TAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAA 24057 | ||| | || || |||||||| || || ||||| ||| | ||| || | ||||| Sbjct 2108 TTGGAGCTGAGAATGCAATCGCGTTATATGGACGAATTTTTACCGAACGCGCAATTTCAA 2167 Query 24058 ACTGACGTAACATAAAACCTAT 24079 ||||||| | ||||||||| || Sbjct 2168 ACTGACGAAGCATAAAACCAAT 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483203056720