Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1168 107 2e-18 seq1094 87.8 2e-12 >seq1168 Length=1683484 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| || ||||| || | || ||||| || |||||||| ||||||||||| || || || Sbjct 215788 CTTTGCTGAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTT 215847 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 215848 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 215907 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || ||||| || ||| || ||||| Sbjct 215908 GCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTTGC 215946 >seq1094 Length=468076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 65020 GAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||||||| ||||| ||||| ||| |||| | | ||| ||| || ||| Sbjct 337445 GAGAAGAAGGCGGCCTGGGCGATGAAGTGGATTGAGAGCA---GCAGCTGCTTTGCGGAG 337389 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | |||| ||||| |||||||| ||| ||||||||| || |||||||| || Sbjct 337388 CGGCTGGTGGCGTACGCGTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTCTGCGCCATC 337329 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 | ||| | |||||||| |||||||| || Sbjct 337328 TTCTGGCTCAAGAAGCGCCAGCTCATGCCCGG 337297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559562716480