Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1307 416 3e-111 seq1039 104 3e-17 >seq1307 Length=2189 Score = 416 bits (460), Expect = 3e-111 Identities = 510/694 (73%), Gaps = 2/694 (0%) Strand=Plus/Minus Query 167338 ATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAAT 167397 |||||||| |||||||| ||||||||| |||| || | | || ||||| || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 167398 GCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTC 167457 || ||||| ||||| | ||| ||| |||| |||||| || ||| | | ||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 167458 GGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTC 167517 |||||| | ||||||||||| || ||||| || || || || ||||||||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 167518 CTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCA 167577 | ||| ||||||||||||| |||||||| | || || || |||||||||||||| || Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 167578 GGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTG 167637 ||| | || || | ||||| |||| |||||| || |||| || || || || || | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 167638 TATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAG 167697 | |||||||||||| |||||||| || || || | | || || | ||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 167698 ACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGC 167757 |||||||||||||||||||||||||| |||||||| || || || || | ||||| Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 167758 AACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCA 167817 |||||||| ||| | || ||||||||| |||| ||||| || | || ||||||| Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 167818 TCGATTGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTACGATTTCGTTTCTCAAGA 167876 | ||||| | | ||| | ||| |||| ||| ||||| || ||||||||||| ||||| Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGA 1651 Query 167877 GATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAA 167936 || | || ||||| || || |||||||||||||||||||| ||||| || ||| | || Sbjct 1650 AATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAA 1591 Query 167937 TGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCC 167996 |||||| |||| || ||| | || || ||||| |||||||| || | || ||||| Sbjct 1590 CGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCC 1531 Query 167997 AGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 ||||| ||| | ||||| || ||||| || ||| Sbjct 1530 TGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 >seq1039 Length=107091 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18126 CATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 || |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||| Sbjct 15795 CAATCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAA 15854 Query 18186 ATCCTACCTGGGGAG 18200 |||||||||||||| Sbjct 15855 GTCCTACCTGGGGAG 15869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561238557002400