Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1307 459 3e-124 seq1039 118 1e-21 >seq1307 Length=2189 Score = 459 bits (508), Expect = 3e-124 Identities = 521/698 (75%), Gaps = 8/698 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | ||| || || |||||||| | |||||||| || | Sbjct 1496 ATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACTAGTTTTTCATGAGGCT 1555 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || ||||| |||| Sbjct 1556 GATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGA 1615 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || ||||| |||||||| || || | || ||||| || || || ||||| |||| Sbjct 1616 AAGTTTCAAACTCAGGGTCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATACGCAC 1675 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| | ||| | ||| | | ||| || | ||| |||||||||| | || |||| Sbjct 1676 GTAAGTTTAAAGCTAAACCTACTACACCAATTGCACTCATCCAAAGACCAGTTACTGGAA 1735 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | ||||||||| || ||||| | || || ||| || | |||||| || || | Sbjct 1736 CAAATAGCATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTG 1795 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| |||||||| ||||||||||| ||||||||||| |||| || | || || | Sbjct 1796 ACCAGAAACGGTTTGCTGTAACCATTGAATAAGTTTCTTCAGCTTGTGTTGGGTTAAACG 1855 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| |||||||| |||||||||||| | || || || || || || |||| | Sbjct 1856 CACGGAATGTGTTTGCACCATCACCATCTTCAAAAAGCGTGTTTTCAACAGTTGCACCGT 1915 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| |||| ||||| | || || | ||| || |||||||||||||| || |||| Sbjct 1916 GAATTGCACAAAGTAATGCTGCTCCAAGTACACCGGCAACACCCATCATATGGAAAGGGT 1975 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || |||||||||||||||||||| | ||| | || |||||| || ||||| | || | Sbjct 1976 TTAAAGTCCAGTTATGGAATCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCAACGC 2035 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 ||||| ||| || || ||||||| |||||||| | ||| || || | || ||| || Sbjct 2036 CGAAACTTGGTGCAAAGAACCAACCAGATTGACCTAAAGGATAAATTAAGAATACAGAAA 2095 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATG 67241 | || |||| || ||| | ||||| ||||| || || || ||||| | |||||| Sbjct 2096 CGAATACAGAAATTGGAGCTGAGAATGCAATCGCGTTATATGGACGAATTTTTACCGA-- 2153 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAAT 67279 ||| || | ||||||||| |||||||| |||||||| Sbjct 2154 --ACGCGCAATTTCAAACTGACGAAGCATAAAACCAAT 2189 >seq1039 Length=107091 Score = 118 bits (130), Expect = 1e-21 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||| Sbjct 15869 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCGCTG 15810 Query 35571 AGCTACTGAGGATTGAGTTTTTCTTGTT 35598 ||||||||||||||| ||||| ||||| Sbjct 15809 AGCTACTGAGGATTGTATTTTTGTTGTT 15782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572044775184720