Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1307 363 2e-95 >seq1307 Length=2189 Score = 363 bits (402), Expect = 2e-95 Identities = 502/699 (72%), Gaps = 10/699 (1%) Strand=Plus/Minus Query 159618 ATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA----TCCGTCCTTA 159673 |||||||| ||||| |||||||||||| | || ||| | |||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 159674 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCC 159733 || || ||||| ||||| | ||| ||| |||| || || || ||| | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 159734 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 159793 || ||||| || ||||||| || || || || || || || ||||| || |||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 159794 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGT 159853 | | || ||| | |||||||| || |||||||| ||||| || |||||||||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 159854 TGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 159913 ||| ||| |||| || | |||| |||| |||| || || || | ||||| || ||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 159914 ACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGA 159973 || | ||||||||| || ||||| || || |||||| | |||| |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 159974 GGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTT 160033 || ||||| || ||||| || |||||||| |||||||| || || || ||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 160034 TTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGAC 160093 ||| ||||| || ||| | || ||||| ||| | ||||| || || | |||||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 160094 ATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGATTTCGTAAGTC 160152 | ||||| | | || | ||| |||| ||| ||||| || |||||||| | Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCAC 1655 Query 160153 AAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTAT 160212 |||| || | || || ||||| || || ||||| || ||||| || ||||| || || | Sbjct 1654 AAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTT 1595 Query 160213 TGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCT 160272 | |||||||| | ||||| ||| |||| || ||||| || |||||||| | | | Sbjct 1594 TAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTAT 1535 Query 160273 TCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| || || || || || | || ||||| ||||||| Sbjct 1534 TCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548365173600720