Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1307 302 5e-77 >seq1307 Length=2189 Score = 302 bits (334), Expect = 5e-77 Identities = 500/719 (70%), Gaps = 31/719 (4%) Strand=Plus/Minus Query 73688 ATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAAC 73747 || ||||| |||||| | |||||||| ||||| | || || ||||| || ||| Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 73748 GCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCT---TTCT-AATATATCC 73803 || | || || ||||| || | |||||| | ||| |||| ||| ||||| Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTC----GTTTCTGTATTCTTAATTTATCC 2074 Query 73804 TTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTA 73863 |||||| || | |||||||||| ||||| ||||| || || ||||| || || | Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 73864 TATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGT 73923 ||||||||| | || || ||||| || ||| | || || || |||||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 73924 AGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACAC 73983 || ||| ||||||| | ||||||||| ||||| || || |||||||| || | ||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 73984 ATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGC 74043 | | |||||| ||| ||| ||| | || ||| | || Sbjct 1893 GCTTTTTGAAGATGG------------TGATGGTG-----CAAAC----ACATTCCGTGC 1855 Query 74044 ATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTC 74103 || | || ||||| | ||||| |||||| ||| |||| || ||| | |||||||| Sbjct 1854 GTTTAACCCAACACAAGCTGAAGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTC 1795 Query 74104 ACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGT 74163 ||| || |||||| |||| |||||||||||| | | ||||||||| ||||| | || || Sbjct 1794 ACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGT 1735 Query 74164 ACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTA- 74222 || || | ||| | |||| | || ||| | |||||| |||| |||| |||| Sbjct 1734 TCCAGTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTAC 1676 Query 74223 GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCT 74282 | || || || || || || ||||| || | || || |||||||| ||||||||||| | Sbjct 1675 GTGCGTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTT 1616 Query 74283 TCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATC 74342 |||| || || || |||||| | || |||||||| | || |||||| | || |||| Sbjct 1615 TCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATC 1556 Query 74343 AACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || ||||| || | || ||||| || || || || ||||| || ||||| || ||| Sbjct 1555 AGCCTCATGAAAAACTAGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572863961401680