Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1168 150 2e-30 seq366 116 5e-20 seq902 109 7e-18 seq1279 100 3e-15 seq1094 96.9 4e-14 seq132 95.1 1e-13 seq992 93.3 5e-13 seq825 87.8 2e-11 >seq1168 Length=1683484 Score = 150 bits (166), Expect = 2e-30 Identities = 118/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||||||||||||||||||||| Sbjct 215928 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 215869 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| ||||||| ||||||||| ||||||||||| ||| ||||||| Sbjct 215868 TTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCCTCCACGCAGGCAAAG 215809 Query 869300 CCGATGAGCCGCTCGGCAAAG 869320 ||| |||||||| |||||| Sbjct 215808 GCGACCAGCCGCTCAGCAAAG 215788 Score = 150 bits (166), Expect = 2e-30 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1630084 GTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 1630143 |||||||| |||||||| |||||||| || | ||||||||| |||||||||||| Sbjct 613269 GTGTCGTTGAAGACGCGCAGCATGGGGACAATGCCGTTGGAGGTGCCGTTGGTGCCACGG 613328 Query 1630144 ACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTG 1630203 | ||||| ||||| |||||| | |||||| || | ||||||||||||||| |||||| Sbjct 613329 ATGTAGGAGCCGGTGGCGCGGATGTTGTGCATGGAGAGGCCGATGCCGCCGGCTGACTTG 613388 Query 1630204 GAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| ||||||| ||||| |||||||||||||| Sbjct 613389 GAGATGCAGGCGCACTCCTTGAGGGTGTCGTAGATGCC 613426 Score = 114 bits (126), Expect = 2e-19 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1627351 TCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTG 1627410 || ||||| |||||||||||| |||||||||| |||| | |||| | |||| || Sbjct 610271 TCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTG 610330 Query 1627411 TTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGC 1627470 |||||||||||||| || || | ||| || |||||| | ||||| || |||||||||||| Sbjct 610331 TTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGC 610390 Query 1627471 AGGCCGTGCTG 1627481 | ||| ||||| Sbjct 610391 ACGCCATGCTG 610401 Score = 102 bits (112), Expect = 1e-15 Identities = 127/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 869672 GCCCTCACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACG 869731 || |||||||| | || || | |||||||||||| || | |||||||||| ||| Sbjct 215223 GCGCTCACCTCGGGGACCTGAATCTCCTTCATGAAGCGCGCCCCCAGGTTCTCCAGCACA 215164 Query 869732 ATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791 ||||| || ||||||||| || ||||||| |||| | |||||| | |||||||||| Sbjct 215163 ATGCCATCAGAGGCGGCGAAGAAGGCCAGGATGTGCGACACAAAGTGCCTCTCGTCGTCG 215104 Query 869792 CTGAGCGACACCCAGTGGACGGTGTCGGCGCTG---AGGTCCACCTCCTCGGC 869841 | || | |||||| | || || | ||| ||||||||||||||||| Sbjct 215103 TTCAGGCGCTCCCAGT---CCTTGACGTCACTGCCCAGGTCCACCTCCTCGGC 215054 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1630240 CCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCC 1630299 ||||||||||||||| ||||||| || || ||||| || ||| |||||| | | | Sbjct 613625 CCCTCGATCGAGTCGTTCTTCATGCAGACCAGGAAGCAGGAGGAGAGCTGCGGGCGTGGC 613684 Query 1630300 GTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACA 1630351 |||||||||||||| |||||||||| || ||||||| | || |||||| Sbjct 613685 GTGCCGGCGTTGAACAGCGTGGGCGAAGCATGGGTGAACCATCGCTGCGACA 613736 >seq366 Length=3905163 Score = 116 bits (128), Expect = 5e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || |||||||| | ||||| |||||||||||||||||||||||||||| Sbjct 2786429 CACCTTCCGCCTCAACCTGTCGGTCACCTCGCCCTACAACGCCGACTTTGACGGCGACGA 2786370 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| ||||| || | |||||| | | ||||||||||| | | | | | |||| Sbjct 2786369 GATGAACATGCACCTGGCGCAGTCCCACGAGACGCGCGCCGAGATCAAGGAGATCATGGC 2786310 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGG 507851 ||| ||| || | |||||||||||||| Sbjct 2786309 GGTGCCGCAGAACATCGTGTCGCCGCAGG 2786281 Score = 89.7 bits (98), Expect = 6e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1592237 GTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 726151 GTGGCCAACATGATCAAGGGGAAGACGCCCGAGGAGATCCGCAAGACCTTCAACATC 726207 Score = 87.8 bits (96), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 509060 AACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCGC 509119 ||||| ||| ||||||||| | | | | ||| | || | ||| || ||||| ||| Sbjct 2784402 AACTCCTACTTGCGCGGCCTGACCCCCCAGGAGTTCTTCTTCCACGCCATGGGCGGCCGC 2784343 Query 509120 GAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGCCGGTGC 509179 |||||||| | ||||| ||||| ||||| ||| || |||||||||||||||||| Sbjct 2784342 GAGGGCCTGATTGACACCGCCGTGAAGACCGCCTCCACCGGCTACATCCAGCGCCGGCTG 2784283 Query 509180 ATCAAGTCGATGGAGAGCCTG 509200 ||||| | |||||| |||| Sbjct 2784282 GTCAAGGCAATGGAGGACCTG 2784262 >seq902 Length=1688559 Score = 109 bits (120), Expect = 7e-18 Identities = 130/169 (77%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 507620 GGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATG-CA 507678 ||||||| ||| || | ||||||||||| |||||||||| ||||| |||| | Sbjct 959764 GGCGACGTGGTGCTGTTCAACCGGCAGCCCTCGCTGCACAGAATGTCCAT---CATGGCG 959708 Query 507679 CAAGGTG-GTGCC-CATGCCCGGGCGCACCATGCGATTCAACCTGGCCGTCA-CGGGCAC 507735 || | | | || ||||||| ||||||| |||| |||||| | ||| || || | Sbjct 959707 CACCGCGCGCGCGTCATGCCCTGGCGCACGCTGCGCTTCAACGAGTGCGTGTGCGCGC-C 959649 Query 507736 CTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAG 507784 |||||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 959648 CTACAACGCCGACTTTGACGGCGACGAGATGAACATCCACGTGCCGCAG 959600 >seq1279 Length=865741 Score = 100 bits (110), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 1572480 TGCGCGCCTCGCCCTGGACAACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCA 1572539 ||| |||||| ||||||| | | | |||| ||||||||| ||||| ||||||| Sbjct 224076 TGCCCGCCTCACCCTGGAA------GGCCGTGTCGCCGTGGTTGAACAGCACCACGCCCA 224129 Query 1572540 CCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGG 1572596 |||||||||| ||||| | || | ||||| ||||| |||||| | | |||||| Sbjct 224130 CCTCGCCGCGGTAGTCCTCGTCCACCACGCCGGCGCCCGTGTCGATAAAGTGCTTGACGG 224189 Query 1572597 CCAGGGACGAGCGCGGCGCCACGCGCCCATAGTAGCCCG-CGGGTATGGCCACGGCCAGA 1572655 ||||| ||| ||||||||||||||| | || ||| | |||| | | | || || Sbjct 224190 CCAGGCCCGACCGCGGCGCCACGCGCGCGTACGTGCCGGGCGGGCACGCAATCTGC-AGG 224248 Query 1572656 CCGGTGCGCACCTGCGCGCGGCCGCGTGCCGGCAC 1572690 || || ||| ||||||||||| || ||||| Sbjct 224249 CCCGTCTTCACGACGGCGCGGCCGCGGGCAGGCAC 224283 >seq1094 Length=468076 Score = 96.9 bits (106), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 ||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | Sbjct 337297 CCGGGCATGAGCTGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGTGG 337356 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 |||||||| ||| || | | | |||||||| |||||| | | || ||| Sbjct 337357 ATGCCCTCCACGCACGCGTACGCCACCAGCCGCTCCGCAAAGCAGCTGCTGCTCTC---- 337412 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 |||||||||||||||||| | ||||| ||| Sbjct 337413 --AATCCACTTCATCGCCCAGGCCGCCTTCTTC 337443 >seq132 Length=569805 Score = 95.1 bits (104), Expect = 1e-13 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 1573889 GCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT 1573948 |||| ||| ||||||||||||||||||||||| |||||| ||| ||||| | | || Sbjct 241951 GCTGCAGGGCCCGCCCGGCACGGGCAAGACCACCAGCATCCTGTGCCTGGCCCACGAGCT 242010 Query 1573949 -CTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCG 1574007 || || | | || ||| ||||| ||||| || || || || |||||||| |||||| Sbjct 242011 GCTGGGTCCCAGCTTCCG-GGAGGCGGTGCTGGAGCTGAATGCATCGGACGATCGCGGCA 242069 Query 1574008 TCGACGTCGTG 1574018 ||||||| ||| Sbjct 242070 TCGACGTGGTG 242080 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1574109 ACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGC 1574168 ||| ||| || |||||||||||||| ||||||||| | || || ||| |||||| Sbjct 242709 ACGCCGGGCGCGCAGCAGGCCCTGCGCCGCACCATGGAGATCTACTCCTCCACCACGCGC 242768 Query 1574169 TTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCC 1574228 || || ||||| |||||||| || || | |||||||| || |||| ||||||||| Sbjct 242769 TTCGCGCTGGCCTGCAACACCTCCTCCAAAATCATCGAGCCCATCCAGTCGCGCTGCGCC 242828 Query 1574229 AT 1574230 || Sbjct 242829 AT 242830 >seq992 Length=1576648 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 733152 GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCAC 733211 ||||||||||||| || ||| || ||| || |||||| || | |||||||||||| Sbjct 765204 GAGGACATGCCCT--TCAGCGC-CGAGGGCATCAGCCCCGACCTCATCATCAACCCGCAC 765260 Query 733212 GCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTG 733268 |||||||| |||||||||||||| ||| | || | ||||| || || |||||||| Sbjct 765261 GCCATCCCCTCGCGCATGACCATCGGCCACCTGGTGGAGGCGCTGATGAGCAAGGTG 765317 Score = 87.8 bits (96), Expect = 2e-11 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 731430 ACCGGCAACTGGACCGTGCAAAAGGGCGC-CGCGTCGGCGTC--GACGGGCGTCGCGCAG 731486 || ||||||||| |||||| ||||| | || || || | | ||||| ||||| Sbjct 759904 ACGGGCAACTGGGGCGTGCA---GGGCGGGCCCGGCGAGATCCGGCCAGGCGTGTCGCAG 759960 Query 731487 ATGCACAACCGCATGACGGTGACGTCGGCCCTGTCCAACATGCGCCGCGTCAACACGCCC 731546 ||| ||||||| |||| |||| | ||| | || |||| ||| ||||| ||||| Sbjct 759961 GTGCTCAACCGCCTGACTTACGCGTCCACGCTGAGCCACCTGCGGCGCATCAACTCGCCC 760020 Query 731547 ATCAACAAGGAGGGCCGGCTGCCCAAGGTGCGCCAACTGCGCGACAGCGTGGCGGGCCTC 731606 || |||||| | | ||||| |||||| |||| | ||||| | |||| | Sbjct 760021 ATTGGGCGCGAGGGCAAGATCGCCAAGCCGCGCCAGCTGCACAACAGCCAGTGGGGCATG 760080 Query 731607 CTGTGCCCCGTGGAGACGCCCGAGGGCGGCTCGTGCGGCCTCGTGAGCAACCTGGCCCTC 731666 | ||||||| |||||||||||||| | ||||| || |||| |||||||| ||| Sbjct 760081 ATCTGCCCCGCCGAGACGCCCGAGGGGCAGGCCTGCGGGCTGGTGAAGAACCTGGCGCTC 760140 Score = 86.0 bits (94), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 732381 TGCGCGTCCATCATCCCGTTCTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACG 732440 ||||| |||||| | || ||| || ||||||||||| |||||||||||| ||||||| Sbjct 762383 TGCGCCTCCATCGTGCCCTTCCCCGACCACAACCAGTCGCCGCGCAACACGTACCAGAGC 762442 Query 732441 GCCATGGGCAAGCAG 732455 ||||||||||||||| Sbjct 762443 GCCATGGGCAAGCAG 762457 >seq825 Length=862972 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 1254452 GCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 |||| || ||| |||||| || |||||||||| ||||| | |||| |||||| || Sbjct 72125 GCGGACGCTCA---CGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATACC 72181 Query 1254512 CACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||||||||||||| Sbjct 72182 GGTATCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 72218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107028740936682