Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1204 91.5 1e-13 seq12 82.4 7e-11 >seq1204 Length=1697657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||| || || || || ||||| || || || | ||||||||||| || |||||| Sbjct 1370614 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTG 1370555 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| | | | || | || || ||||| || ||||| ||||| || ||| ||||| Sbjct 1370554 GAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTG 1370495 Query 24914 TTGCGATTGCGCGGAGGC 24931 |||| |||| |||||| Sbjct 1370494 CTGCGCCTGCGTGGAGGC 1370477 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || ||||| || || || | ||||||||||| || |||||||||||| | Sbjct 1369965 AGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCG 1369906 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || ||||| || ||||| ||||| || ||| ||||| |||| |||| Sbjct 1369905 CACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCG 1369846 Query 24925 CGGAGGC 24931 |||||| Sbjct 1369845 TGGAGGC 1369839 >seq12 Length=2794402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||| || || || || ||||| || || || ||||||| ||||| || |||||| Sbjct 2342175 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTG 2342234 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| | | | || | || || ||||| || ||||| || || || ||| ||||| Sbjct 2342235 GAGGACGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2342294 Query 24914 TTGCGATTGCGCGGAGGC 24931 |||| ||||||| ||| Sbjct 2342295 CTGCGCCTGCGCGGCGGC 2342312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890030472880