Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq366 158 2e-32 seq1168 145 1e-28 seq68 140 5e-27 seq1324 114 2e-19 seq132 109 9e-18 seq252 100 5e-15 seq992 98.7 2e-14 seq902 86.0 1e-10 >seq366 Length=3905163 Score = 158 bits (174), Expect = 2e-32 Identities = 181/242 (75%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 2201187 TGAACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 2201246 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 || |||||||||||||||||||||||||| | | || | || |||| || || Sbjct 2201247 GGACGAGGCGCACGGCGGTCTGGATCTCGCGCG---AGGTCAGGGTGGGCTTCTTGTTGA 2201303 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || | ||| || |||| | | | |||| || | | ||| || || |||| Sbjct 2201304 CACGGGACAGCTGGGCGGCGGCCGAGGCGATCTTCTCAAACTGGTCCACGATGAAGGAGT 2201363 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 | | ||| | ||| || ||| ||||||||| |||||||||||||||||||||||||| Sbjct 2201364 TGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCT 2201423 Query 1485707 TG 1485708 || Sbjct 2201424 TG 2201425 Score = 156 bits (172), Expect = 7e-32 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 2072740 TGAACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 2072681 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||| ||||||||||||||||| | | | ||| |||||| || Sbjct 2072680 GGACGAGGCGCACAGCGGTCTGGATCTCGCGCGAGGTCAGGGTGGGCTTCTTGTTGACGC 2072621 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| || |||| | | | |||| || | | ||| || || ||||| | Sbjct 2072620 GGGACAGCTGGGCGGCGGCCGAGGCGATCTTCTCAAACTGGTCCACGATGAAGGAGTTGA 2072561 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| || ||| ||||||||| |||||||||||||||||||||||||||| Sbjct 2072560 GGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTG 2072502 Score = 152 bits (168), Expect = 8e-31 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || ||||| ||| ||||||| |||||| ||| Sbjct 1861373 TGAACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCATGCTTGGCCAGCTCGCCGGGCA 1861314 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||||||||||||||||||||| | | | ||| |||||| || Sbjct 1861313 GGACGAGGCGCACGGCGGTCTGGATCTCGCGCGAGGTCAGGGTGGGCTTCTTGTTGACGC 1861254 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| || |||| | | | | || || | | ||| || || ||||| | Sbjct 1861253 GGGACAGCTGGGCGGCGGCCGAGGCAATCTTCTCAAACTGGTCCACGATGAAGGAGTTGA 1861194 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| || ||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1861193 GGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCTTG 1861135 Score = 102 bits (112), Expect = 1e-15 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| ||||||||| | || || |||||||||||||||||||||||||||| Sbjct 2786429 CACCTTCCGCCTCAACCTGTCGGTCACCTCGCCCTACAACGCCGACTTTGACGGCGACGA 2786370 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| ||||| || | ||||| | | | |||||||| || | | ||||| Sbjct 2786369 GATGAACATGCACCTGGCGCAGTCCCACGAGACGCGCGCCGAGATCAAGGAGATCATGGC 2786310 Query 429752 CGTGGCCCTCAAGGCCGTGTCGCCGCAGG 429780 ||| | | || |||||||||||||| Sbjct 2786309 GGTGCCGCAGAACATCGTGTCGCCGCAGG 2786281 >seq1168 Length=1683484 Score = 145 bits (160), Expect = 1e-28 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||||||||||||||||||||| Sbjct 215928 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 215869 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| |||||| ||||||||| ||||||||||| ||| ||||||| Sbjct 215868 TTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCCTCCACGCAGGCAAAG 215809 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 |||| |||||||| ||||| Sbjct 215808 GCGACCAGCCGCTCAGCAAA 215789 Score = 136 bits (150), Expect = 6e-26 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2073559 GTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 2073618 |||||||| |||||||| |||||||| |||| ||||||||| |||||||||||| Sbjct 613269 GTGTCGTTGAAGACGCGCAGCATGGGGACAATGCCGTTGGAGGTGCCGTTGGTGCCACGG 613328 Query 2073619 ACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTG 2073678 | ||||| ||| | |||||| | |||||| || | ||||||||||||||| | |||| Sbjct 613329 ATGTAGGAGCCGGTGGCGCGGATGTTGTGCATGGAGAGGCCGATGCCGCCGGCTGACTTG 613388 Query 2073679 GAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| ||||||| || || || ||||||||||| Sbjct 613389 GAGATGCAGGCGCACTCCTTGAGGGTGTCGTAGATGCC 613426 Score = 131 bits (144), Expect = 3e-24 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 794498 TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGG 794557 || |||||||||| | ||||||||||||||| ||| ||||| ||||||||| | ||||| Sbjct 215612 TGGTGATCCACTTGAGCGCCCACTCTGCCTTCTTCTTCACCACGGGCACCGTCTGGATGG 215553 Query 794558 CGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 794617 || | || || |||||||||| |||||||| ||| || || | || || || Sbjct 215552 CGTGGAACAGCCGGTCCTTCTCCTTGCTGTCCTTGATGTACGTCTCCAGCAGCAGGCTGT 215493 Query 794618 AGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | |||| ||||||||| |||||||||||||||||||| || ||| Sbjct 215492 ACATCTCGCTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 215446 Score = 111 bits (122), Expect = 2e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2069620 TCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTG 2069679 || ||||| |||||||||||| |||||||||| ||| | |||| | |||| || Sbjct 610271 TCACCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTG 610330 Query 2069680 TTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGC 2069739 |||||||||||||| || || | ||| || |||||| | ||||| ||||||||||||||| Sbjct 610331 TTGCCCAGGATCTGGGAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGC 610390 Query 2069740 AGGCCGTACTG 2069750 | ||| | ||| Sbjct 610391 ACGCCATGCTG 610401 Score = 102 bits (112), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 ||||||| || || | ||||||||||||||| | |||||||||| ||| ||||| | Sbjct 215216 CCTCGGGGACCTGAATCTCCTTCATGAAGCGCGCCCCCAGGTTCTCCAGCACAATGCCAT 215157 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCG 796270 | ||||||||| ||||| |||| |||| | |||||| | |||||||||| | || Sbjct 215156 CAGAGGCGGCGAAGAAGGCCAGGATGTGCGACACAAAGTGCCTCTCGTCGTCGTTCAGGC 215097 Query 796271 AGACCCAGTGGACCGTGTCGGC---GCCGAGGTCGACCTCCTCGGC 796313 |||||| || || || | ||| ||||| ||||||||||| Sbjct 215096 GCTCCCAGT---CCTTGACGTCACTGCCCAGGTCCACCTCCTCGGC 215054 >seq68 Length=289985 Score = 140 bits (154), Expect = 5e-27 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||||||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 113414 TGAACTTGGTGACGGCCTTCGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 113473 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||||||||||||||||||||| | | | ||| |||||| || Sbjct 113474 GGACGAGGCGCACGGCGGTCTGGATCTCGCGTGAGGTCAGGGTGGGCTTCTTGTTCACGC 113533 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| || |||| | | | |||| || | | || || || ||||| | Sbjct 113534 GGGACAGCTGGGCGGCGGCCGAGGCGATCTTCTCAAACTGATCCACGATGAAGGAGTTGA 113593 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| | ||| || ||| ||||||||| ||| |||||||||||||||||||||| Sbjct 113594 GGATGGCCATGGACTTGGAGGAGATGCCGGTGTCAGGGTGCACCTGCTTGAGCACCT 113650 >seq1324 Length=2270 Score = 114 bits (126), Expect = 2e-19 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 2179 TGAACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 2238 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 || |||||||||||||||||||||||||| Sbjct 2239 GGACGAGGCGCACGGCGGTCTGGATCTCGCG 2269 >seq132 Length=569805 Score = 109 bits (120), Expect = 9e-18 Identities = 106/134 (79%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 2019026 GCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT 2019085 |||| ||||||||||||||||||||||||||| |||||| ||||||||| | || ||| Sbjct 241951 GCTGCAGGGCCCGCCCGGCACGGGCAAGACCACCAGCATCCTGTGCCTGGCCCACGAGCT 242010 Query 2019086 -CTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCG 2019144 || || | | || ||| ||||| ||||| || || ||||| || ||||| |||||| Sbjct 242011 GCTGGGTCCCAGCTTCCG-GGAGGCGGTGCTGGAGCTGAATGCATCGGACGATCGCGGCA 242069 Query 2019145 TGGACGTCGTGCGT 2019158 | ||||| ||| || Sbjct 242070 TCGACGTGGTGGGT 242083 Score = 87.8 bits (96), Expect = 3e-11 Identities = 113/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 2019246 ACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGG 2019305 ||| ||| || ||||||||||| || |||||||| | ||| || ||| ||||| Sbjct 242709 ACGCCGGGCGCGCAGCAGGCCCTGCGCCGCACCATGGAGATCTACTCCTCCACCACGCGC 242768 Query 2019306 TTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCC 2019365 || ||||||||||||||||| || || | ||||||| || ||||| || |||||| Sbjct 242769 TTCGCGCTGGCCTGCAACACCTCCTCCAAAATCATCGAGCCCATCCAGTCGCGCTGCGCC 242828 Query 2019366 ATCTTGCGCTTTGCGCGCCTCAC-CGACGCCCAG 2019398 ||| | | |||||||| ||| | | |||||| Sbjct 242829 ATCGTCAG--GTGCGCGCCACACGCTAGGCCCAG 242860 >seq252 Length=478699 Score = 100 bits (110), Expect = 5e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| ||| |||||| ||||||| ||||| ||| Sbjct 475004 TGAACTTGGTGACGGCCTTGGTGCCCTCGCTGACTGCGTGCTTGGCCAGCTCGCCCGGCA 475063 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 ||||||||||| |||||||||||||| | | | ||| |||| |||||| Sbjct 475064 GACAGAGGCGCACGGCAGTCTGGATCTCGCGAGAGGTCAGCGTCTTGCTCTTGTT 475118 >seq992 Length=1576648 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 651989 ACGGGCAACTGGACCGTGCAAAAGGGCGC-CGCGTCGACGTC--GACGGGCGTCGCCCAG 652045 |||||||||||| |||||| ||||| | || ||| || | | ||||| | ||| Sbjct 759904 ACGGGCAACTGGGGCGTGCA---GGGCGGGCCCGGCGAGATCCGGCCAGGCGTGTCGCAG 759960 Query 652046 ATGCACAACCGCATGACCGTCACGTCGGCCCTGTCCAACATGCGCCGCGTCAACACGCCC 652105 ||| ||||||| |||| | |||| | ||| | || |||| ||| ||||| ||||| Sbjct 759961 GTGCTCAACCGCCTGACTTACGCGTCCACGCTGAGCCACCTGCGGCGCATCAACTCGCCC 760020 Query 652106 ATCAACAAGGAGGGCAAACTGCCCAAGGTGCGCCAGTTGCGCGACAGCGTGGCGGGCCTC 652165 || |||||||| | ||||| ||||||| ||| | ||||| | |||| | Sbjct 760021 ATTGGGCGCGAGGGCAAGATCGCCAAGCCGCGCCAGCTGCACAACAGCCAGTGGGGCATG 760080 Query 652166 CTGTGCCCCGTGGAGACGCCCGAGGGCGGCTCCTGTGGCCTCGTGAGCAACCTGGCCCT 652224 | ||||||| |||||||||||||| |||| || || |||| |||||||| || Sbjct 760081 ATCTGCCCCGCCGAGACGCCCGAGGGGCAGGCCTGCGGGCTGGTGAAGAACCTGGCGCT 760139 Score = 96.9 bits (106), Expect = 5e-14 Identities = 93/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 653717 GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCAC 653776 ||||| ||||| | || ||| || |||| || |||||| || |||||||||||||| Sbjct 765204 GAGGACATGCCCT--TCAGCGC-CGAGGGCATCAGCCCCGACCTCATCATCAACCCGCAC 765260 Query 653777 GCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTG 653833 |||||||| |||||||||||||| ||| | || ||||||| || || |||||||| Sbjct 765261 GCCATCCCCTCGCGCATGACCATCGGCCACCTGGTGGAGGCGCTGATGAGCAAGGTG 765317 Score = 95.1 bits (104), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 652913 ATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCACAACCAGGCGCCGCGCAAC 652972 || ||||||| ||||| |||||| | ||||| || ||||||||||| ||||||||||| Sbjct 762371 ATCCTGGGCGTGTGCGCCTCCATCGTGCCCTTCCCCGACCACAACCAGTCGCCGCGCAAC 762430 Query 652973 ATCTACCAGACGGCCATGGGCAAGCAG 652999 | ||||||| ||||||||||||||| Sbjct 762431 ACGTACCAGAGCGCCATGGGCAAGCAG 762457 Score = 87.8 bits (96), Expect = 3e-11 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 651739 CTACTGCGTGCACCGCCTGCTGGCCGTGGCGCTCGGGCGGCTGCCGCTGGACGACCGCGA 651798 |||| |||||||||||||||| |||||||| ||||||| | | |||||||||||| Sbjct 759201 CTACGTCGTGCACCGCCTGCTGCTGGTGGCGCTGGGGCGGCGGGAGGAGGACGACCGCGA 759260 Query 651799 CCACATGGCCCTCAAGCGCATCGA-CACCGCGGCCGTCCTGCTGCCCACCCTCTTCCGGC 651857 |||| | | ||||||| |||| | |||||| |||||| ||| ||||||||| | Sbjct 759261 CCACTACGGCAACAAGCGCCTCGACCTGGGCGGCC-CGCTGCTGGCCAACCTCTTCCGCC 759319 Query 651858 CGCTCTT 651864 ||| || Sbjct 759320 AGCTGTT 759326 >seq902 Length=1688559 Score = 86.0 bits (94), Expect = 1e-10 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 429620 CATGCCCGGTCGCACCTTCCGGCTCAACCTGGCCGTGA-CGGGCACCTACAACGCCGACT 429678 ||||||| | ||||| | || ||||| | |||| || || ||||||||||||||| Sbjct 959693 CATGCCCTGGCGCACGCTGCGCTTCAACGAGTGCGTGTGCGCGC-CCTACAACGCCGACT 959635 Query 429679 TTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCGG 429717 |||||||||||||||||||| | |||||||| ||| ||| Sbjct 959634 TTGACGGCGACGAGATGAACATCCACGTGCCGCAGGCGG 959596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916103219840894