Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1307 343 2e-89 >seq1307 Length=2189 Score = 343 bits (380), Expect = 2e-89 Identities = 493/692 (71%), Gaps = 12/692 (2%) Strand=Plus/Minus Query 159099 ATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTA 159154 |||||||| |||||||| ||||||||| | || ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 159155 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 159214 || || ||||| ||||| | ||| ||| |||| || || || ||| | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 159215 ACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTT 159274 | ||||| || ||||||| || || || || || || || ||||| ||| | || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 159275 CCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGT 159334 | | | ||| | ||||| ||||| || ||||| ||||||| |||||||||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 159335 TGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATAC 159394 ||| ||| | || || | |||| | || | ||| ||||| || | || |||||||| || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 159395 ATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGA 159454 | | || ||||| || |||||||| || |||||| | |||| |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 159455 GGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTT 159514 || |||||||| ||||| || |||||||| |||||||| || || || || | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 159515 TTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGA- 159573 ||| ||||| || ||| | || ||||||||| | ||||| || || | ||||| |||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 159574 -CATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 159632 | || ||||| | | ||| | ||| | || | ||||| || |||||||| Sbjct 1713 GAGTGCA--ATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCA 1656 Query 159633 CAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTT 159692 ||||| || | || || ||||| || || |||||||| ||||| || || || |||||| Sbjct 1655 CAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTT 1596 Query 159693 CTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATC 159752 | || ||||| | ||||||||| |||| || ||||| || |||||||| | | Sbjct 1595 TTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTA 1536 Query 159753 TTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||||| || || ||| ||||| | || ||||| Sbjct 1535 TTCCCTGAGGAGGTTTTACCACGTGGAAACGC 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545264425771680