Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1307 387 2e-102 >seq1307 Length=2189 Score = 387 bits (428), Expect = 2e-102 Identities = 504/694 (73%), Gaps = 10/694 (1%) Strand=Plus/Minus Query 179263 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTA 179318 ||||| || |||||||||||||||||| | || ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 179319 CAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCC 179378 || |||||||| || | | ||| ||| | ||||||||| |||||| | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 179379 ACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATT 179438 | || ||||| ||||||||||||| ||| || || ||||| || || || |||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 179439 CCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGT 179498 | | | ||||| ||||| ||||| |||||||| | ||||| || || |||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 179499 TGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATAC 179558 ||| ||| | || || | || | || | ||| ||||| || | |||||| || || || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 179559 ATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGA 179618 | | ||||||||| || ||||||||||| ||||| || | || |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 179619 GGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTT 179678 || || ||||| ||||||||||| |||||||| ||||| || || || || || | || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 179679 TAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGT 179738 | || || |||||||| |||||||||| ||| |||||||| || | ||||||||| | Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 179739 CTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGTC 179797 | | ||||| | | || ||||| |||| ||| ||||| |||||||| || | Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCAC 1655 Query 179798 AAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTC 179857 |||| || | || || ||||| |||||||| || || ||||||||||| || |||||| Sbjct 1654 AAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTT 1595 Query 179858 TGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCT 179917 | || ||||| | ||||||||| |||| || ||||| || |||||||| | | | Sbjct 1594 TAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTAT 1535 Query 179918 TCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| || || || |||| |||| ||||| || Sbjct 1534 TCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605657009649360