Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1168 149 6e-31 seq1204 96.9 3e-15 seq12 95.1 1e-14 seq514 86.0 6e-12 seq534 82.4 7e-11 >seq1168 Length=1683484 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 ||||||||||||||| ||||||||||||||||||||||| || ||||||||| || || Sbjct 215953 CAGGCACGCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGT 215894 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||||| |||| |||| | || |||||| || Sbjct 215893 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAA 215834 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA 120803 ||| | |||||||||| |||||||||||||| ||||| || || Sbjct 215833 GAAGATGCCCTCCACGCAGGCAAAGGCGACCAGCCGCTCAGCAAA 215789 >seq1204 Length=1697657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| ||| ||| | | | ||||| ||||||||||| Sbjct 1370508 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 1370566 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 || | |||||||||||||||||||| |||||||| |||||||| Sbjct 1370567 GGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 1370611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| ||| ||| | | | ||||| ||||||||||| Sbjct 1369870 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 1369928 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || | |||||||||||||||||||| ||||||||| Sbjct 1369929 GGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCT 1369965 >seq12 Length=2794402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || ||| ||| |||||| ||||||||||| Sbjct 2342282 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 2342223 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || |||||||||||||| |||||||| |||||||| Sbjct 2342222 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 2342178 >seq514 Length=2321867 Score = 86.0 bits (94), Expect = 6e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 1627178 GGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 1627119 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||| | || || ||||||||||| || ||||||||| Sbjct 1627118 CGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCT 1627082 >seq534 Length=2359 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 || |||| || || ||||| ||| ||| ||| |||||| ||||||||||| || Sbjct 1225 ACCCTTT-TGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAA 1167 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 | ||||||||||||||||| || |||||||| |||||||| Sbjct 1166 AGATGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412666445040