Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1168 140 5e-27 seq366 131 2e-24 seq1094 102 1e-15 seq1324 100 4e-15 seq132 98.7 1e-14 seq68 96.9 5e-14 seq992 93.3 6e-13 seq902 93.3 6e-13 >seq1168 Length=1683484 Score = 140 bits (154), Expect = 5e-27 Identities = 116/139 (83%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| |||||||| |||| ||||||| |||| ||||||||||| ||||||||| ||| Sbjct 215788 CTTTGCTGAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTT 215847 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| ||||||| ||||||||||||||||||||||||||||| | || ||| ||||| Sbjct 215848 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACG 215906 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||| |||||||| Sbjct 215907 AGCTCATCTCGCGCGACGA 215925 Score = 132 bits (146), Expect = 7e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 260006 GGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 |||||||| ||||| |||||| ||||||| |||||||||| | |||||||||||||| Sbjct 613426 GGCATCTACGACACCCTCAAGGAGTGCGCCTGCATCTCCAAGTCAGCCGGCGGCATCGGC 613367 Query 260066 TTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCC 260125 | || ||||| | |||||| | ||| ||||| | |||||||||||| ||| Sbjct 613366 CTCTCCATGCACAACATCCGCGCCACCGGCTCCTACATCCGTGGCACCAACGGCACCTCC 613307 Query 260126 AACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163 |||||| |||| |||||||| ||||| || |||||||| Sbjct 613306 AACGGCATTGTCCCCATGCTGCGCGTCTTCAACGACAC 613269 Score = 120 bits (132), Expect = 4e-21 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||||||| ||||||||||| |||| ||||| | |||||| || ||| | || || ||| Sbjct 610401 CAGCATGGCGTGCGCAACTCGCTGCTGGTGGCCCCCATGCCGACCGCCTCCACCTCCCAG 610342 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 ||||||||||||| |||| |||||| | ||| |||||||||| |||||||||| Sbjct 610341 ATCCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTG 610282 Query 263032 CTCTCGGGCGA 263042 || ||||| || Sbjct 610281 CTGTCGGGTGA 610271 Score = 114 bits (126), Expect = 2e-19 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||||||||| ||||||||| || | ||| || ||| | Sbjct 215447 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACAGCCTGCTGCTG 215506 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| |||||||| |||||||||| || || | ||||||| | |||||| Sbjct 215507 GAGACGTACATCAAGGACAGCAAGGAGAAGGACCGGCTGTTCCACGCCATCCAGACGGTG 215566 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACA 1456156 || ||||| ||| ||||| || |||||| | |||||||||| || Sbjct 215567 CCCGTGGTGAAGAAGAAGGCAGAGTGGGCGCTCAAGTGGATCACCA 215612 Score = 89.7 bits (98), Expect = 7e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||||||| | ||||||| || |||||||||| || || ||||||||||| |||| Sbjct 613736 TGTCGCAGCGATGGTTCACCCATGCTTCGCCCACGCTGTTCAACGCCGGCACGCCACGCC 613677 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGG 260007 ||||| || || ||||| ||| | ||||||| ||| ||||||||||| Sbjct 613676 CGCAGCTCTCCTCCTGCTTCCTGGTCTGCATGAAGAACGACTCGATCGAGGG 613625 >seq366 Length=3905163 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||||||| |||| |||| ||| ||||||| Sbjct 2072497 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGTCC 2072550 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || ||| | | || |||| | | | |||| Sbjct 2072551 ATGGCCATCCTCAACTCCTTCATCGTGGACCAGTTTGAGAAGATCGCCTCGGCCGCCGCC 2072610 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||| | ||| ||||||| ||| | | ||||||||||||||||||| ||| Sbjct 2072611 CAGCTGTCCCGCGTCAACAAGAAGCCCACCCTGACCTCGCGCGAGATCCAGACCGCTGTG 2072670 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 2072671 CGCCTCGTCCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2072722 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||||||| |||| |||| ||| ||||||| Sbjct 2201430 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGTCC 2201377 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || ||| | | || |||| | | | |||| Sbjct 2201376 ATGGCCATCCTCAACTCCTTCATCGTGGACCAGTTTGAGAAGATCGCCTCGGCCGCCGCC 2201317 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||| | || ||||||| ||| | | ||||||||||||||||||||||| Sbjct 2201316 CAGCTGTCCCGTGTCAACAAGAAGCCCACCCTGACCTCGCGCGAGATCCAGACCGCCGTG 2201257 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 2201256 CGCCTCGTCCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 2201205 Score = 127 bits (140), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||||||| |||| |||| ||| ||||||| Sbjct 1861130 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGTCC 1861183 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || ||| | | || || | | | | |||| Sbjct 1861184 ATGGCCATCCTCAACTCCTTCATCGTGGACCAGTTTGAGAAGATTGCCTCGGCCGCCGCC 1861243 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||| | ||| ||||||| ||| | | ||||||||||||||||||||||| Sbjct 1861244 CAGCTGTCCCGCGTCAACAAGAAGCCCACCCTGACCTCGCGCGAGATCCAGACCGCCGTG 1861303 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| |||||| ||||||| ||| ||||| ||||||||||||| Sbjct 1861304 CGCCTCGTCCTGCCCGGCGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 1861355 Score = 96.9 bits (106), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1816120 CAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTCCGGCGGTCTTGAC 1816179 |||| |||||| | ||||| |||||||||||||||||| ||||||||| || Sbjct 2784262 CAGGTCCTCCATTGCCTTGACCAGCCGGCGCTGGATGTAGCCGGTGGAGGCGGTCTTCAC 2784321 Query 1816180 GGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTT 1816239 ||| ||||| | |||||||||||||||||| || ||| || || | ||| | | | | Sbjct 2784322 GGCGGTGTCAATCAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGAACTCCTGGGGGGT 2784381 Query 1816240 GAGGCCGCGCTCGTACGAGTT 1816260 ||||||||| ||| ||||| Sbjct 2784382 CAGGCCGCGCAAGTAGGAGTT 2784402 Score = 93.3 bits (102), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 1817516 CCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGT 1817575 |||||||||||||| | || | | ||| |||| | | | | | ||||||||||| | Sbjct 2786281 CCTGCGGCGACACGATGTTCTGCGGCACCGCCATGATCTCCTTGATCTCGGCGCGCGTCT 2786340 Query 1817576 C-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGC 1817634 | | ||||| | || || | ||||||||||||||||||||||||||| ||||||| Sbjct 2786341 CGTGGGACTGCGCCAGGTGCATGTTCATCTCGTCGCCGTCAAAGTCGGCGTTGTAGGGCG 2786400 Query 1817635 CCGTGACGGCCAGGTTGA 1817652 ||||| | |||||||| Sbjct 2786401 AGGTGACCGACAGGTTGA 2786418 >seq1094 Length=468076 Score = 102 bits (112), Expect = 1e-15 Identities = 116/153 (76%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| ||||| | |||||||||||||||||| | | | || || |||||| ||| Sbjct 337443 GAAGAAGGCGGCCTGGGCGATGAAGTGGATTGAGA-GCAGCAGCTG----CTTTGCGGAG 337389 Query 1456182 CGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 ||||| || | | || |||| ||||||||| ||||| ||| |||||||||||| Sbjct 337388 CGGCTGGTGGCGTACGCGTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTCTGCGCCATC 337329 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||||||||||||||| |||||||||||| Sbjct 337328 TTCTGGCTCAAGAAGCGCCAGCTCATGCCCGGT 337296 >seq1324 Length=2270 Score = 100 bits (110), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 |||||||||||||||||||||||||| || ||| |||||| ||||||| ||||||||| Sbjct 2269 CGCGAGATCCAGACCGCCGTGCGCCTCGTCCTGCCCGGCGAGCTGGCCAAGCACGCCGTG 2210 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 2209 TCCGAGGGCACCA 2197 >seq132 Length=569805 Score = 98.7 bits (108), Expect = 1e-14 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 333094 CACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGC 333153 ||| ||||| | |||||| |||||||| || || || || ||||| ||||| ||| || Sbjct 242080 CACCACGTCGATGCCGCGATCGTCCGATGCATTCAGCTCCAGCACCGCCTCC-CGGAAGC 242022 Query 333154 CGC-ACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCG 333212 | ||||| || || | ||||||||| |||||| |||||||||||||||||||||| Sbjct 242021 TGGGACCCAGCAGCTCGTGGGCCAGGCACAGGATGCTGGTGGTCTTGCCCGTGCCGGGCG 241962 Query 333213 GACCCGCCAGC 333223 | ||| |||| Sbjct 241961 GGCCCTGCAGC 241951 >seq68 Length=289985 Score = 96.9 bits (106), Expect = 5e-14 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724918 AGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGA 724977 |||||||||||||||||||||| |||| |||| ||| |||||||||| | | Sbjct 113650 AGGTGCTCAAGCAGGTGCACCCTGACACCGG-----CATC-TCCTCCAAGTCCATGGCCA 113597 Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 || | ||||| || || || | | || |||| | | | |||| | ||| Sbjct 113596 TCCTCAACTCCTTCATCGTGGATCAGTTTGAGAAGATCGCCTCGGCCGCCGCCCAGCTGT 113537 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 | ||| |||||| ||| | | | |||||||||||||||||||||||||| Sbjct 113536 CCCGCGTGAACAAGAAGCCCACCCTGACCTCACGCGAGATCCAGACCGCCGTGCGCCTCG 113477 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| ||| || ||||||| ||||||||| || |||||||| Sbjct 113476 TCCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCAC 113434 >seq992 Length=1576648 Score = 93.3 bits (102), Expect = 6e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| ||||||| |||||||||||| ||||||||||| || || || Sbjct 762457 CTGCTTGCCCATGGCGCTCTGGTACGTGTTGCGCGGCGACTGGTTGTGGTCGGGGAAGGG 762398 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 | |||||| ||||| ||||||| || | ||||||| |||| ||| || Sbjct 762397 CACGATGGAGGCGCACACGCCCAGGATCATGGCGGGGTGGATCTCGCAGTGTGT 762344 >seq902 Length=1688559 Score = 93.3 bits (102), Expect = 6e-13 Identities = 127/170 (75%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 1817582 CTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCG-TGA 1817640 ||| ||||| |||| ||||||||||||||||||||||||||| ||||||| || || | Sbjct 959600 CTGCGGCACGTGGATGTTCATCTCGTCGCCGTCAAAGTCGGCGTTGTAGG-GCGCGCACA 959658 Query 1817641 CGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG-GGCAC-CACCTTGTG-CATGAGCA 1817697 || | |||||| |||| || || | ||||||| || | | | || | |||| | Sbjct 959659 CGCACTCGTTGAAGCGCAGCGTGCGCCAGGGCATGACGCGCGCGCGGTGCGCCATG---A 959715 Query 1817698 TGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACCACGGCGTCGCCG 1817747 |||| |||| || |||||||||||||| | || ||| |||||||| Sbjct 959716 TGGACATTCTGTGCAGCGAGGGCTGCCGGTTGAACAGCACCACGTCGCCG 959765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177681375826052