Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq534 105 6e-18 seq1204 95.1 1e-14 seq12 86.0 6e-12 seq514 82.4 7e-11 >seq534 Length=2359 Score = 105 bits (116), Expect = 6e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| |||||||| ||||||||||| || |||| ||||||||||| || ||||| | Sbjct 1223 CCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1164 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 | | |||||||||||||| || | || |||||||||| Sbjct 1163 TGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1126 >seq1204 Length=1697657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 1370478 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1370537 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || ||||| || | |||||||||||| | || Sbjct 1370538 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1370597 Query 35630 ACGCTCTCCTTGTCC 35644 | || |||||||||| Sbjct 1370598 ATGCCCTCCTTGTCC 1370612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 1369840 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1369899 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | ||| || | || ||||||||||| || ||||| || | |||||||||||| Sbjct 1369900 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTC 1369952 >seq12 Length=2794402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || |||| ||||||||||| || || || Sbjct 2342276 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 2342217 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 2342216 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 2342177 >seq514 Length=2321867 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| ||||| || Sbjct 1627172 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAA 1627113 Query 35605 TATCAACCGCTGCTGGTC 35622 |||| ||||||||||| Sbjct 1627112 GATCAGACGCTGCTGGTC 1627095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786015397680