Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1204 95.1 1e-14 seq12 91.5 1e-13 seq514 89.7 5e-13 >seq1204 Length=1697657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| ||| ||||| ||||| || ||||| || |||||||||||| | Sbjct 1370478 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1370537 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | |||||||| ||||| || Sbjct 1370538 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1370597 Query 134607 ATGCCTTCTTTTTCTTG 134623 ||||| || || || || Sbjct 1370598 ATGCCCTCCTTGTCCTG 1370614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| ||| ||||| ||||| || ||||| || |||||||||||| | Sbjct 1369840 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1369899 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | |||||||| ||||| || Sbjct 1369900 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1369959 Query 134607 ATGCCT 134612 |||||| Sbjct 1369960 ATGCCT 1369965 >seq12 Length=2794402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || ||||||||||| | | |||| | Sbjct 2342302 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 2342243 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| ||||| || ||||| || Sbjct 2342242 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 2342183 Query 134616 TTTTCTTG 134623 || || || Sbjct 2342182 TTGTCCTG 2342175 >seq514 Length=2321867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | | |||| | Sbjct 1627198 AGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1627139 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| ||||||||| || || || |||||| Sbjct 1627138 CCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCT 1627082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389896671920