Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1307 342 6e-89 >seq1307 Length=2189 Score = 342 bits (378), Expect = 6e-89 Identities = 495/698 (71%), Gaps = 8/698 (1%) Strand=Plus/Minus Query 162012 ATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTA----TCCGTCCCTA 162067 ||||| || ||||| |||||||||||| | || ||| | |||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 162068 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 162127 || || ||||| ||||| | ||| ||| |||| || || || ||| | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 162128 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 162187 || ||||| || ||||||| || || || || || || || ||||| || |||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 162188 CCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGT 162247 | | || || | |||||||||||||||||||| | ||||| |||||||||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 162248 TGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATAC 162307 ||| ||| |||| || | |||| | || | ||| |||||||| | || |||||||| || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 162308 ATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGA 162367 | | || ||||| || |||||||| || |||||| | | ||||| | || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 162368 AGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTT 162427 ||| |||||||| ||||| || |||||||| |||||||| || || || ||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 162428 TTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGAC 162487 ||| ||||| || ||| | || || || ||| | ||||| || || | ||||| |||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 162488 ATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCA 162547 | ||||| | | ||| | ||| | ||| | ||||| || |||||||| || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 162548 GGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCT 162607 || || | || || ||||| |||||||||||||| ||||| || || || ||||| | Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 162608 CAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTT 162667 || ||||| | ||||| ||| | || || || || || ||||| || | | || Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 162668 CCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 ||| || || ||| | || | || ||||| ||||||| Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559494586345200