Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1307 360 3e-94 >seq1307 Length=2189 Score = 360 bits (398), Expect = 3e-94 Identities = 499/694 (72%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 176175 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTA----TCCGTCCCTA 176230 ||||| || |||||||||||||||||| | || | | |||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 176231 CAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCC 176290 ||||| ||||||||| | ||| || ||||||| || ||| || | | || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 176291 ACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATT 176350 ||||||||||| ||||||||||| || || || || || ||||| || |||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 176351 CCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGT 176410 | | || || | || || ||||| |||||||| | ||||| |||||||||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 176411 TGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATAC 176470 ||| ||| |||| || | |||| |||| | |||||| || || | ||||||||||| || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 176471 CCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGA 176530 || | ||||||||| || ||||| ||| |||||| | | || || | || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 176531 AGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTT 176590 ||| || ||||| |||||||| || ||||| |||||||| ||||| || || || || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 176591 TAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGT 176650 | || || |||||| | |||||||||||| | ||||| || || | ||||||||| | Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 176651 CTCAAGT---ATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGA 176706 ||| ||||| | | || | ||| |||| ||| ||||| |||||||| || Sbjct 1713 ---GAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTT 1658 Query 176707 GCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCC 176766 ||||| ||| | || || ||||| |||||||||||||||||||| ||||| || || | Sbjct 1657 CACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTC 1598 Query 176767 TTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTG 176826 || | |||||||| | | || |||||||| || ||||| || ||||| | | | Sbjct 1597 TTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAG 1538 Query 176827 TATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||||| || || ||| |||| | || ||||| Sbjct 1537 TATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729917318934480