Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1307 340 2e-88 >seq1307 Length=2189 Score = 340 bits (376), Expect = 2e-88 Identities = 497/700 (71%), Gaps = 12/700 (2%) Strand=Plus/Minus Query 160223 ATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTA 160278 ||||| || ||||| |||||||||||| | || ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 160279 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCC 160338 || || ||||| ||||| | ||| ||| |||| || || |||||| | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 160339 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 160398 || ||||| || ||||||| || || || || || || || ||||| || |||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 160399 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGT 160458 | | || ||| | |||||||| || |||||||| | ||||| |||||||||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 160459 TGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 160518 ||| ||| |||| |||| |||| | || |||| || || || | ||||| || ||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 160519 ACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGA 160578 || | ||||||||| || ||||| || || |||||| | | ||||| | || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 160579 AGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTT 160638 ||| |||||||| ||||| || |||||||| |||||||| || || || ||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 160639 TTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA- 160697 ||| ||||| || ||| | || || || ||| | ||||| || || | |||||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 160698 -CATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 160756 | || ||||| | | ||| | ||| | || | ||||| || |||||||| Sbjct 1713 GAGTGCA--ATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCA 1656 Query 160757 CAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTA 160816 ||||| ||| | || || ||||| || || ||||| || ||||| || || || || || Sbjct 1655 CAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTT 1596 Query 160817 CTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATC 160876 | || ||||| | ||||| ||| | || || || || || ||||| || | | Sbjct 1595 TTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTA 1536 Query 160877 TTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 ||||| || || ||| | || | || ||||| ||||||| Sbjct 1535 TTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552464304631680