Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1168 98.7 1e-15 seq1094 86.0 8e-12 >seq1168 Length=1683484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || || || || || || || |||||| || || Sbjct 215946 GCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 215887 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 215886 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 215827 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 |||||||| || ||||| || | || || || || ||| Sbjct 215826 CCCTCCACGCAGGCAAAGGCGACCAGCCGCTCAGCAAAG 215788 >seq1094 Length=468076 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774 ||| |||||||| |||||||| | ||| | || |||||||| || ||||||||| Sbjct 337296 ACCGGGCATGAGCTGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGTG 337355 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC 122834 ||| |||||||| ||||| |||| | || || || || ||| ||| || | || Sbjct 337356 GATGCCCTCCACGCACGCGTACGCCACCAGCCGCTCCGCAAAGCAGCTG--CTGCTC-TC 337412 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTC 122867 || ||| ||||| ||||| |||||||||||| Sbjct 337413 AATCCACTTCATCGCCCAGGCCGCCTTCTTCTC 337445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021433361600