Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1168 125 9e-24 seq1094 111 2e-19 >seq1168 Length=1683484 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||| || |||||||| || || |||||| || || Sbjct 215946 GCAAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 215887 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 215886 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 215827 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 |||||||| || || || || | || |||||||||||| Sbjct 215826 CCCTCCACGCAGGCAAAGGCGACCAGCCGCTCAGCAAAG 215788 >seq1094 Length=468076 Score = 111 bits (122), Expect = 2e-19 Identities = 121/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 130065 AGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAG 130124 ||||| ||| |||||||| |||||||| | |||||| || || || || ||||| | Sbjct 337289 AGCACCCACCGGGCATGAGCTGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGG 337348 Query 130125 AGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT 130184 ||||| ||| |||||||| |||||| |||| | || ||||| |||||| ||| | Sbjct 337349 AGAAGTGGATGCCCTCCACGCACGCGTACGCCACCAGCCGCTCCGCAAAGCAGCTGC--- 337405 Query 130185 TTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTC 130224 | | |||| ||||||||||||||| |||||| ||||| Sbjct 337406 TGCTCTCAATCCACTTCATCGCCCAGGCCGCCTTCTTCTC 337445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424794827760