Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1168 138 1e-27 >seq1168 Length=1683484 Score = 138 bits (152), Expect = 1e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | || || | || ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 215789 TTTGCTGAGCGGCTGGTCGCCTTTGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCTTTC 215848 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || ||||||||||| ||||| ||||||||||| ||||| | |||||||||||| Sbjct 215849 TGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 215908 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || || || ||||||||||| || Sbjct 215909 CTCATCTCGCGCGACGAGGGCCTGCA 215934 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 ||||||||| |||| || || ||||||||||||||||| ||| |||||||| |||| ||| Sbjct 610389 CGCAACTCGCTGCTGGTGGCCCCCATGCCGACCGCCTCCACCTCCCAGATCCTGGGCAAC 610330 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAG 20494 |||||| |||||||| ||||| ||||||||||| |||| || ||| | |||||| Sbjct 610329 AACGAGTGCTTCGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGTCGGGTGAG 610270 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 ||||||| ||||||||||| ||||| |||||||| ||||||||| |||| ||||||| Sbjct 610286 CGGCGCACGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGG 610345 Query 78586 GCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 | ||| ||||||||||||||||| || ||||| || || || || | |||||| Sbjct 610346 GAGGTGGAGGCGGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCACGCCATGC 610399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTG 79614 |||| |||||| || || |||||||| || ||||||| || | |||||| || || | Sbjct 613269 GTGTCGTTGAAGACGCGCAGCATGGGGACAATGCCGTTGGAGGTGCCGTTGGTGCCACGG 613328 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTT 79673 || | ||| | || || ||||| | ||| | || |||||||| |||| |||| Sbjct 613329 ATGTAGGAGCCGGTGGCGCGGATGTT-GTGCATGGAGAGGCCGATGCCGCCGGCTGACTT 613387 Query 79674 GGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 ||||||| |||||||||||||| || ||||||||||| Sbjct 613388 GGAGATGCAGGCGCACTCCTTGAGGGTGTCGTAGATGCC 613426 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTC-CAGATAGATGGCGAACGAACCCTTGCGCTTG 79527 |||| | ||||||||||||||| ||||| ||| || ||||| || | |||||||||||| Sbjct 613030 AGTCAAAGATGTCGGCGTGCCAGGGCTCGCAG-TACATGGCAAATGCGCCCTTGCGCTTG 613088 Query 79528 CCGCCGCCCTGGTTGACGTACCGGGC 79553 ||||||||||||| ||||| ||||| Sbjct 613089 CCGCCGCCCTGGTCCACGTAGCGGGC 613114 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 |||||| ||||| |||| || | |||| ||||||||| ||| ||| |||||| || Sbjct 612127 CCAGGTGGAGACTGGCAACCCCTTCATGCTGTACAAGGACCACGCCAACCGCAAGTCCAA 612068 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTAC 19893 ||| ||||| | ||| | |||||||||||||||||||| || Sbjct 612067 CCAGCAGAACCTGGGCACCATCAAGTCGTCCAACCTGTGCAC 612026 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||||||||| || |||||||||||||| ||||||||||| |||| || ||||| Sbjct 613426 GGCATCTACGACACCCTCAAGGAGTGCGCCTGCATCTCCAAGTCAGCCGGCGGCATCGGC 613367 Query 19352 ATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 || | ||| | || ||||| | | || | ||| ||| || ||||| | Sbjct 613366 CTCTCCATGCAC-AACATCCGCGCCACCGGCTCCTACATCCGTGGCACCAACGGCACCTC 613308 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACAC 19449 | |||| || ||||| ||||| |||||||||||| |||| Sbjct 613307 CAACGGCATTGTCCCCATGCTGCGCGTCTTCAACGACAC 613269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515571070240