Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1168 109 6e-19 >seq1168 Length=1683484 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| ||||| || ||||| ||||| || || | |||||| || Sbjct 610395 GGCGTGCGCAACTCGCTGCTGGTGGCCCCCATGCCGACCGCCTCCACCTCCCAGATCCTG 610336 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 |||||||||||| |||||||| ||||| ||||||||||| ||||||| Sbjct 610335 GGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACGTGCGCCG 610286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG- 53427 ||||||||||| || ||||||||||| ||| ||||||||||| | || || ||||| Sbjct 613426 GGCATCTACGACACCCTCAAGGAGTGCGCCTGCATCTCCAAGTCAGCCGGCGGCATCGGC 613367 Query 53428 -TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | |||| ||| | ||| |||| || | |||| | ||| || || |||||| | Sbjct 613366 CTCTCCA-TGCAC-AACATCCGCGCCACCGGCTCCTACATCCGTGGCACCAACGGCACCT 613309 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 || | || || || || ||||| |||||||||||| |||| Sbjct 613308 CCAACGGCATTGTCCCCATGCTGCGCGTCTTCAACGACAC 613269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 55090 CTTATTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCG 55149 ||| ||||||||||||||||| ||| ||||| || ||||| || ||||||||| Sbjct 611528 CTTCTTTGACTTTGACAAGCTGGCCGAGGTGACCACCGTGGTGACCCGCAACCTGAACAA 611469 Query 55150 GGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCG 55209 | |||| ||| || |||||||| || |||||||| |||||| | || ||||| Sbjct 611468 GATCATTGACGTCAACTACTACCCCGTGGAGACGGCGCGCCGCTCCAACATGCGCCACCG 611409 Query 55210 GCCCATCGCCATCGGTGTACAGG 55232 ||||||| | | || || |||| Sbjct 611408 CCCCATCGGCCTGGGCGTGCAGG 611386 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| ||||||| ||||| || || |||| Sbjct 215892 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCCGAGAAG 215833 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCG 74899 |||||||| || || || ||||||||||| || || Sbjct 215832 AAGATGCCCTCCACGCAGGCAAAGGCGACCAGCCG 215798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206793090800