Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1204 104 3e-17 seq12 104 3e-17 seq534 86.0 7e-12 seq514 82.4 9e-11 >seq1204 Length=1697657 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 1370614 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTG 1370555 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| || || || || || || Sbjct 1370554 GAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTG 1370495 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || || || || Sbjct 1370494 CTGCGCCTGCGTGGAGG 1370478 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 1369964 GGCATCCCCCCCGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 1369905 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || || || || |||| || || Sbjct 1369904 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGT 1369845 Query 27628 GGTGG 27632 || || Sbjct 1369844 GGAGG 1369840 >seq12 Length=2794402 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 2342175 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTG 2342234 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 2342235 GAGGACGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 2342294 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 2342295 CTGCGCCTGCGCGGCGG 2342311 >seq534 Length=2359 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 1124 CAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTG 1183 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| | || ||| | || ||||| || ||||||||| Sbjct 1184 GAGGACGGCCGCACCTTGGCCGACTACAACATCCAAAAGG 1223 >seq514 Length=2321867 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 31958 TCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATAT 32017 || |||| ||||| || | ||| ||| ||||||||||| ||||||||| | || | Sbjct 714704 TCGAGCGCTCCATCCCCTGCATGGTGGATGGCCTCAAGCCCGGCCAGCGCAAGATCATGT 714645 Query 32018 ACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACG 32077 | |||| ||||| |||||| ||| ||| | ||||||| ||||||| | ||||| | Sbjct 714644 TTGGCTGCTTCAAGCGCAACCTGAAGAGCGACGTCAAGGTGGTGCAGCTGGCCGGCTATG 714585 Query 32078 TGGCAGAGCA 32087 || | ||||| Sbjct 714584 TGTCGGAGCA 714575 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || || || || ||||| || ||||| | || Sbjct 1627083 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1627142 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || || || || |||| || ||| Sbjct 1627143 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 1627202 Query 27628 GGTGGACA 27635 || || || Sbjct 1627203 GGCGGCCA 1627210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300804527520