Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq1039 684 0.0 seq1307 343 2e-89 >seq1039 Length=107091 Score = 684 bits (758), Expect = 0.0 Identities = 1004/1410 (71%), Gaps = 19/1410 (1%) Strand=Plus/Plus Query 185781 GGTTGACTGATATAGCACATCATCACCTTGCAATAGGAGTAATATTCATTATTGCAGGTC 185840 |||| || ||||| |||||||| || | || || | || || || ||| | || || | Sbjct 102955 GGTTAACGGATATGGCACATCACCATTTAGCTATTGCTGTGATTTTTATTTTAGCTGGCC 103014 Query 185841 ATATGTATAGAAGTGCTTGGGGTATTGGTCACTCAATGAAGGAGATACTTGAAGCACATA 185900 | |||||| | | || ||||||||||| ||| || || ||||| ||||| | Sbjct 103015 ACATGTATCGTACAATTTTTGGTATTGGTCATAGTATGCGTGAAATTCTTGAGGCACAAA 103074 Query 185901 CACCACCAAGAGGAGGACTAGGTGCAGGTCATAAAGGATTATATGAAACAGTTACAGACT 185960 | ||||| ||| | |||||||||| || ||||| ||||| || ||||| | | | Sbjct 103075 CTCCACCTTCTGGAAGTTTAGGTGCAGGACACAAAGGTTTATACGATACAGTAAATAATT 103134 Query 185961 CATTACACCTACAGTTAGGTCTTGCACTTGCATCTCTAGGTGTTGTTACTAGTCTGGTGG 186020 || | || | || | |||||||| |||||| | | ||| | || || | | || | Sbjct 103135 CACTTCATTTCCAACTTGGTCTTGCTCTTGCAAGTGTCGGTACTATTTCTTCTTTAGTAG 103194 Query 186021 CACAACATATGTACTCAATGCCATCCTATGCTTTCATAGCACAGGCGCATACTACGCAAG 186080 | ||||| ||||| ||||||||| | |||||||| ||||||| | ||| || |||| Sbjct 103195 CTCAACACATGTATTCAATGCCACCTTATGCTTTTTTAGCACAAGATTTTACAACACAAG 103254 Query 186081 CTGCTCTATATGTTCATCATCAATACATTGCAACTGCTCTGATGGTTGGTGCTTTTGCGC 186140 | ||||| || ||||||||||| || || | | ||| |||||||||||| | Sbjct 103255 CAGCTCTTTACACACATCATCAATATATCGCTGGGTTTATTATGTGTGGTGCTTTTGCTC 103314 Query 186141 ATGGAGCAATATTTTTTGTTAGAGACTTTGATCCT-ACTCTGAATAAGGACAATGTTCTT 186199 | || ||||| || ||||| | || | |||||| | | | ||| ||||| ||| Sbjct 103315 ACGGTGCAATTTTCTTTGTACGTGATTATGATCCAGAAGCAAACCGTGGA-AATGTCCTT 103373 Query 186200 GATAGAATGCTACAGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTC 186259 | | | || || | || |||||||| |||| ||||||||||||| | ||||| Sbjct 103374 GCTCGTATTCTTGATCATAAAGAAGCTCTTATTTCACACTTAAGTTGGGCAAGTTTATTC 103433 Query 186260 CTTGGATTCCATACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCAT 186319 | ||||||||||| ||||| | ||||| ||||||||||| || ||| ||||| | Sbjct 103434 TTAGGATTCCATACATTAGGTCTTTATGTTCATAATGATGTTGTTCAGGCCTTTGGAACT 103493 Query 186320 CCTGAGAGACAGATATTAATTGAACCTATATTTGCACAGTGGATACAGGCAGCATCA-GG 186378 || || | ||| || | |||||||| | ||||| || ||||| || | || ||| || Sbjct 103494 CCGGAAAAACAAATTCTTATTGAACCAGTGTTTGCTCAATGGATTCAATCTGC-TCACGG 103552 Query 186379 TAAGATGATGTATGGATTAAGTTTCTTACTATCTGATCCAAATAGTGCTGCAAGTCTAGC 186438 ||| | ||||| || ||||||||| ||| | | ||||| |||| || || Sbjct 103553 TAAAACAGCATATGGCTTTGATTTCTTACTTTCTTCAGCTACAAGTGCACCAAGCCTTGC 103612 Query 186439 AG--CAGAGAGTATGCCT----GGTAATCATTACTGGATGAGTGCTATGAATGATCAAAC 186492 | || | || || ||| | |||| || || | || | |||| | Sbjct 103613 TGGTCAAGCTCTTTGGCTTCCAGGT--TGGTTACAGG--GAAT--TAACAGTGATT---C 103663 Query 186493 AAACAGTCTGTTTCTACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACT 186552 ||| | | || || |||| || |||| |||||| |||||||| ||||| ||||| | Sbjct 103664 CAACTCTTTATTCCTTACAATCGGGCCTGGTGATTTTTTAGTTCACCATGCAATTGCTTT 103723 Query 186553 TGGATTACATACTACAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAA 186612 || |||||||| ||||| ||||| || || |||||||| | |||||| | ||||| || Sbjct 103724 AGGTTTACATACAACAACATTAATTCTGGTTAAGGGTGCCCTTGATGCTCGTGGTTCTAA 103783 Query 186613 ACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGG 186672 | | || || ||||| |||||||| || || ||||||||||||||||| || | || Sbjct 103784 ATTAATGCCTGATAAAAAAGATTTTGGCTACAGTTTCCCTTGTGATGGTCCTGGTCGTGG 103843 Query 186673 TGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAA 186732 |||||||||||| | ||| | |||||||||||||||||| |||| |||||| || || Sbjct 103844 TGGTACTTGTGACATTTCGGCTTGGGATGCTTTCTATCTTGCTGTTTTCTGGATGTTAAA 103903 Query 186733 TACAATAGCATGGGCAGATTTTTATTGGCACTGGAAGAACCTTGCTAGTTGGCAAGGTAA 186792 ||||| | |||| |||||||||||| ||||| |||||| || ||||||||||| Sbjct 103904 CACAATTGGTTGGGTGACTTTTTATTGGCATTGGAAACACCTTGGTATCTGGCAAGGTAA 103963 Query 186793 TCAGGCACAATTCAATACATCAGGAACATATCTTATGGGTTGGTTCAGAGATTATCTCTG 186852 | | ||||||||| ||| |||||| | ||||||||| | | |||||||| || Sbjct 103964 TGTGAATCAATTCAATGAATCTTCTACATATTTAATGGGTTGGCTTCGTGATTATCTTTG 104023 Query 186853 GGCGAATAGTGCGCCTGTAATCACAGGGTACACACCATTTGGTATGAATAATCTCTCTGT 186912 | || | | | | |||| || || | ||||| |||||||| | | | ||||| Sbjct 104024 GTTAAACTCTTCACAATTGATCAATGGTTATAATCCATTCGGTATGAACAGTTTATCTGT 104083 Query 186913 ATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTCCTTAT 186972 ||||| ||||||||||| |||||||| ||| ||| |||||||| || |||||| | || Sbjct 104084 TTGGGCTTGGATGTTCTTATTTGGTCACTTAATTTATGCAACAGGTTTCATGTTCTTAAT 104143 Query 186973 TTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGAAC 187032 ||||||| | ||||| |||||||| |||||||| ||| | |||||||| ||| ||||||| Sbjct 104144 TTCTTGGCGTGGTTACTGGCAAGAATTAATTGAAACTTTAGCTTGGGCTCATGAAAGAAC 104203 Query 187033 TCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTCTATTGTTCAAGC 187092 ||| | ||||| | | ||||| | ||||||||||| |||||||||||||||||||| Sbjct 104204 TCCTCTTGCAAACCTTGTGCGTTGGCGTGATAAACCAGTAGCACTTTCTATTGTTCAAGC 104263 Query 187093 AAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTATGCACCATTCCT 187152 | || ||||||||| | ||||| | |||| | ||| || || |||||| ||||| | Sbjct 104264 TCGTCTCGTTGGTTTAACTCATTTCTCTGTAGGTTATGTTCTAACTTATGCAGCATTCTT 104323 Query 187153 GATAGCAACAACAGCAAGTAGATACGGTTA 187182 || |||| ||| ||| || |||||| Sbjct 104324 AATCGCAAGTACAAGCGGTAAATTCGGTTA 104353 Score = 239 bits (264), Expect = 6e-58 Identities = 405/583 (69%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 182809 TGAAAAGTGGGGGAAACCAGG--ATTCTTTGATAGGTCTTTAGCAAAAGGACCTAAAACA 182866 |||||| |||| |||||||| ||| || | ||||| ||||||| || | ||| Sbjct 10544 TGAAAAATGGGCTAAACCAGGTCATTTTTCACGAACTCTTT--CAAAAGGTCCAACTACA 10601 Query 182867 ACCACATGGATATGGAATTTACACGCAGATGCTCATGATTTTGATAAGCATTCTAGTGAT 182926 || || ||||| ||||||||||| || || || ||||||||||||| ||| | || ||| Sbjct 10602 ACAACGTGGATTTGGAATTTACATGCTGACGCGCATGATTTTGATACGCAAACAAGCGAT 10661 Query 182927 CTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTGCTCATCTAGGTATCATCTTT 182986 || |||| | |||||||||| | ||| ||||| |||| ||| || ||||| |||||| Sbjct 10662 CTTGAAGAAATTTCAAGAAAAGTTTTTAGCGCACATTTTGGTCAGCTCGGTATTATCTTT 10721 Query 182987 GTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTTCAAACTATACAGGATGGTTG 183046 | ||| | || | | | || || || || | || ||||| ||| | ||||| Sbjct 10722 ATTTGGTTAAGTGGAATGTATTTCCATGGGGCACGTTTCTCAAATTATGAGGCGTGGTTA 10781 Query 183047 GCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTTGGCCTATACTTGGTCAAGAG 183106 |||| ||||| ||| | ||||| |||||||||| || ||||| || | |||||||| Sbjct 10782 ACAGATCCAACACATATTAAACCAAGTGCTCAAGTTGTATGGCCGATTGTAGGTCAAGAA 10841 Query 183107 ATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTAGAATTACATCTGGTTTATTT 183166 || || |||| ||| |||| || | || ||| || ||||||||| || || || Sbjct 10842 ATTTTAAATGCAGACGTTGGTGGTGGTTTCCAGGGTCTTCAAATTACATCAGGGTTCTTC 10901 Query 183167 CAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAACTAATGGCGCTA--GCACTAG 183224 || | ||| | || || || |||| |||| ||||| | | ||| ||| | | Sbjct 10902 CAATTATGGCGTGCTGCTGGAATTACAAGTGAATTACAACT--TTACACTACTGCAATTG 10959 Query 183225 GTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCATTTCATTTTCACGTTGCTG 183284 ||| | | ||||||| || | |||||| ||| ||| || |||| |||| |||| Sbjct 10960 GTGGTCTTATTATGGCTGCTGCAATGTTTTTTGCAGGTTGGTTCCATTATCACAAAGCTG 11019 Query 183285 CTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATGAATCATCACCTTGCAGGTT 183344 | || || || |||||| || ||||| ||||||||| | |||||||| | || || Sbjct 11020 CACCAAAACTAGAATGGTTCCAAAATGTTGAATCTATGCTAAATCATCATTTAGCTGGCC 11079 Query 183345 TGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACATTTAATTCA 183387 | | ||| | || ||||| ||||| || || |||||| Sbjct 11080 TTTTAGGTTTAGGCAGTTTAGCTTGGGCTGGGCACCAAATTCA 11122 Score = 214 bits (236), Expect = 2e-50 Identities = 197/247 (80%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 182486 ATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCT 182545 ||||| || | || ||||| |||||||| || ||||| || || |||||||| ||| Sbjct 107010 ATGTCACATACAGTGAAAATTTATGATACATGTATTGGCTGTACTCAATGTGTTCGTGCT 106951 Query 182546 TGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCT 182605 ||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||| ||| Sbjct 106950 TGTCCTACTGATGTATTAGAGATGGTACCTTGGGATGGGTGTAAAGCAAATCAAATCGCT 106891 Query 182606 TCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACA 182665 || |||| |||| || ||||||||||| || || |||| ||| | |||||||| ||| Sbjct 106890 TCTGCACCACGAACAGAAGATTGTGTAGGTTGCAAACGATGCGAATCTGCATGTCCAACA 106831 Query 182666 GACTTTTTAAGTATTCGTGTTTA-CTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 |||||||||||| ||||||| || || |||| | ||||| || |||||||||| |||| Sbjct 106830 GACTTTTTAAGTGTTCGTGTATATCTAGGGT-CTGAAACAACTCGAAGCATGGGCTTAGC 106772 Query 182725 ATATTAA 182731 |||||| Sbjct 106771 TTATTAA 106765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 183587 GATTTCCTCACCTTTAAAGGTGGTTTGAATCCTGTAACTGGCAGTCTTTGGATGACAGAT 183646 ||||| || || ||| |||| ||| | ||||| || || || | | ||| | || ||| Sbjct 11286 GATTTTCTTACTTTTCAAGGCGGTCTTAATCCAGTTACAGGTGGATTATGGTTAACTGAT 11345 Query 183647 ATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATTGCAGGTCATATGTATCGC 183706 | | ||||| || |||| || |||||| | || | ||||||||||| ||||| Sbjct 11346 ACTGTTCATCACCATTTAGCTATTGCAGTTTTATTCTTAGTTGCAGGTCATCAATATCGA 11405 Query 183707 ACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATTAGATGGTCAGAATGGT 183760 ||||| |||||||||||||| | ||||| || ||||| | || || ||| Sbjct 11406 ACAAATTGGGGTATTGGTCATAGCTTAAAAGAAATTTTAGAAGCACATAAAGGT 11459 >seq1307 Length=2189 Score = 343 bits (380), Expect = 2e-89 Identities = 503/715 (70%), Gaps = 21/715 (3%) Strand=Plus/Minus Query 191120 ATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGATTGGTGGGTATTAGACCTTACAAT 191179 || || || ||| | ||||||||||||||||| | | ||| ||| | || || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 191180 GCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCACTT 191239 || |||| || || ||| || | || ||| |||||||||||| ||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 191240 GGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGTTGCAGCAATCTTTAGATATATT 191299 ||||| |||||||||||||||| || || ||||| ||||| || ||| ||| Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 191300 CTATTCATTCAAGGTTTCCACAATATTACACTCAACCCTTTCCACATGATGGGAGTTGCA 191359 ||||| | ||||| ||||| || || | ||||||||||| |||||||| ||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 191360 GGTATTCTAGGTGGAGCATTACTATGTGCCATTCATGGTGCTACAGTACAGAACACCTTG 191419 ||| | || || | ||||||||| ||||| ||||| ||||| || || | ||||| | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 191420 TATGAGGACTCAAGCATCTATACAGATGGTCAAGTTCAAAGTACAACCTTTAGAGCATTT 191479 | ||| ||||||| | | | || ||| || | || ||| Sbjct 1889 TTTGA------------------AGATGGTGATGGTGCAAACACA---TTCCGTGCGTTT 1851 Query 191480 GATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACAGATTCTGGTCACAG 191539 | |||||||| | ||| ||||||||||| ||| | || |||||| | ||||||||||| Sbjct 1850 AACCCAACACAAGCTGAAGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAA 1791 Query 191540 ATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTGTTTGTTCCT 191599 || |||||| | || || || |||||| | | |||||||||| ||| | |||||||| Sbjct 1790 ATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCA 1731 Query 191600 GTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAACTTAAGAGCA 191659 |||| || | |||| |||| ||| | |||||| | || | |||||| | || Sbjct 1730 GTAACTGGTCTTTGGATGAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCG 1671 Query 191660 TATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTAT 191719 |||||||| || || ||||| || | || || |||||||| ||||||||||| |||||| Sbjct 1670 TATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTAT 1611 Query 191720 ACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCTTCAGTAGACCAACCT 191779 || || || |||||| | || |||||||| | || |||||| || | ||| || ||| Sbjct 1610 ACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCT 1551 Query 191780 CATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAAATGCATTGTAAT 191834 ||||| || | || ||||| ||||| ||| |||| | ||||| || | |||| Sbjct 1550 CATGAAAAACTAGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631416576237360