Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1042 105 2e-17 seq1039 100 7e-16 >seq1042 Length=398099 Score = 105 bits (116), Expect = 2e-17 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 || ||| ||| || || |||| |||||||||||||||||||||||||||| ||||||| Sbjct 29702 TATGTGGCACAAAAAAGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTG 29643 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| |||| |||||||||||||||| Sbjct 29642 GTAACACGACGTATAGGGTCTGACAC 29617 Score = 100 bits (110), Expect = 7e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| || || |||||||| |||||||| || ||||| || Sbjct 56199 AAGATTTGGCCATCAGTAATAGAAATCACGTTTGTAGGAATATAAGCTGAGACATCTCCA 56258 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||| ||||| | |||||| | || |||| || || ||||||| || ||| Sbjct 56259 GCTTGAGTTTCAATAACAGGAAGTGCAGTTAAGGAACCTCCACCAACATCTTT 56311 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||| || |||||||| |||||||| || |||||||| || || |||| Sbjct 11502 TTCTGGGTGACCAAAGAACCAGAATAAGTGTTGATAGAGAATAGGATCTCCACCACCTGC 11561 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||| || || | |||||||| |||||||||||||| |||| Sbjct 11562 AGGATCGAAGAACGTTGTATTAAAGTTTCTATCAGTTAACAACA 11605 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCA-AGTCTTCTAAAAGGGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | ||| | | ||||| Sbjct 7726 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACGCTT-TCGAGCGGCAG 7784 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 ||||| |||| || |||||||||||||||| ||||| || Sbjct 7785 CAGTGAGGAATCTTGGACAATGGGCGAAAGCCTGATCCAG 7824 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || ||| ||||||| || | ||||| | || ||||||||||||| |||||| | Sbjct 8473 TATGTCAAGGACTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCAC 8414 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | ||||| || |||||||||||| |||||| |||| | |||||| || Sbjct 8413 TTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAGTCTTGCGACCGTACTCCTCAGGCGG 8354 Query 7844 A-ATATTTACGCGTTAGCT 7861 | | || ||||||||||| Sbjct 8353 ACCTTTTAACGCGTTAGCT 8335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| | |||||| | |||||| ||||||| ||||||| ||||| |||||| Sbjct 11680 AAAGGTAATCTGTGCATACTCATACCAGGAGCTCTCATGTTAAATACAGTAGTTATAAAG 11739 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 ||||| || || | || | | | ||| |||||||||||||| || ||||| | || Sbjct 11740 TTTATCGCACCCATAATACTACTTGCACCAGCAAGATGTAAACTGAAAATTGCAAGGTCT 11799 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || ||| || || ||| | |||| | ||| || || || ||||| || || || Sbjct 11800 ACTGAAGGACCAGAATGACTTGCAATTCCAGCTAATGGAGGATAGACTGTCCATCCAGT 11858 >seq1039 Length=107091 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 80222 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 80163 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 80162 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 80103 Query 7855 GTTAGCT 7861 ||||||| Sbjct 80102 GTTAGCT 80096 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || || ||||| || || || ||||| || || || |||||||| ||||| Sbjct 72080 GAAAATTTGTCCGTCTGTAATTGAAATTACGTTTGTTGGAATGTACGCAGAAACGTCACC 72021 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 | |||| ||||| ||||||||||| || || | ||||| ||| || || | |||| Sbjct 72020 TTCTTGAGTTTCTACAACAGGTAATGCAGTCATACTTCCACTACCTAACTTATCATTT 71963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 79554 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 79612 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| |||| || |||||||||||||| ||| ||| |||| ||||| Sbjct 79613 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 79665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192510634054124