Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1307 430 1e-115 seq1039 86.0 7e-12 >seq1307 Length=2189 Score = 430 bits (476), Expect = 1e-115 Identities = 514/697 (74%), Gaps = 8/697 (1%) Strand=Plus/Minus Query 165477 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTA 165532 || ||||| |||||||| ||||||||| | || || |||||| ||||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 165533 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCC 165592 || || ||||| ||||| | ||| ||| ||||||||||| ||| || | || ||||| Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 165593 TCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 165652 | | || ||||| |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 165653 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGT 165712 | | | ||| ||||||| |||||||||||||| | || || || || |||||||| || Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 165713 AGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 165772 || ||| | | || | |||||| |||| ||| ||||| |||| || || || || || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 165773 TTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGA 165832 | | |||||||||||| |||||||| ||| || ||| | || || | || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 165833 GGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTT 165892 ||||||||||| ||||| || || |||||||||||||| || ||||||||| | ||||| Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 165893 CAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGAC 165952 || || |||||| | |||||||||||||| |||||||| || | || ||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 165953 AAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCA 166012 ||| | |||||| | | ||| | || | || | ||||| |||||||| || || || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 166013 GGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCT 166072 || ||| | ||||| || || || ||||||||||| |||||||| ||||| || || | Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 166073 TAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTT 166132 || ||||| | ||||| ||| ||||| || ||| || |||||||| || | || || Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 166133 CCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||| || || || ||| | || ||||| |||||| Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 1497 >seq1039 Length=107091 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 50101 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 50042 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 50041 TCCTGTCATCCCGA 50028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557645017464720