Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1307 417 1e-111 >seq1307 Length=2189 Score = 417 bits (462), Expect = 1e-111 Identities = 511/694 (74%), Gaps = 10/694 (1%) Strand=Plus/Minus Query 179163 ATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTA----TTCGTCCTTA 179218 || ||||| |||||||| ||||||||||| || ||| |||||| ||||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 179219 CAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCC 179278 || || || || || || | ||||||| |||| || || ||||| || | || ||||| Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 179279 TCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTT 179338 | | || || || ||||||||||| || || || ||||| || |||||||| || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 179339 CCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGT 179398 | | | ||| | || || ||||| |||||||| | ||||| ||||| ||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 179399 AGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACAC 179458 || ||| | || || | |||||| |||||||| ||||| ||||| || || || ||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 179459 ACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGA 179518 || |||||||| |||| |||| |||||| || || | || ||||||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 179519 GGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTT 179578 || || ||||| |||||||| || |||||||||||||| || || |||||| | || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 179579 CAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGAC 179638 || || |||||| |||| ||||||||| | |||||||| || | |||||||||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 179639 CTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCAC 179697 | |||||| | | ||| | || |||| |||| | || ||||| || ||||||| Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCAC 1655 Query 179698 AAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTAT 179757 |||| || | || || || || |||||||| || || |||||||| || || || || | Sbjct 1654 AAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTT 1595 Query 179758 TGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTAT 179817 | || |||||| | |||||||||||||| | ||||| || |||||||| | |||| Sbjct 1594 TAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTAT 1535 Query 179818 TTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | ||||| || || || ||| | || |||||||| Sbjct 1534 TCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596297167131360