Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1307 381 7e-101 >seq1307 Length=2189 Score = 381 bits (422), Expect = 7e-101 Identities = 503/695 (72%), Gaps = 2/695 (0%) Strand=Plus/Minus Query 170919 ATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGATTAGACCGTACAAT 170978 || ||||| |||||||| ||||||||||| ||| ||| ||| | || || || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGTTCGGTAAAAATTCGTCCATATAAC 2130 Query 170979 GCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTT 171038 || || || ||||| | ||| || |||| || || || ||| | || |||||| | Sbjct 2129 GCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCCTTTA 2070 Query 171039 GGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTG 171098 || || || |||||||||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 2069 GGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATTCATT 2010 Query 171099 CTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCA 171158 | ||| | ||||| ||||| |||||||| | || || || ||||||||||||||||| Sbjct 2009 TTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTTGCC 1950 Query 171159 GGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTG 171218 ||| | || || | ||||| |||| ||||||||| |||| || || || || || | Sbjct 1949 GGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACACGCTT 1890 Query 171219 TATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAG 171278 | ||||||||||||| |||||||| || || ||| || | || || | ||||| Sbjct 1889 TTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAA 1830 Query 171279 ACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGC 171338 || ||||| ||||| || || || ||||||||||| || ||||||||| | || || Sbjct 1829 ACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCA 1770 Query 171339 AATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGT 171398 || || |||||||| || ||||||||||| |||||||| || | ||||||||| | ||| Sbjct 1769 AACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGATGAGT 1710 Query 171399 AGTCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGATTTCGTAAGTCAGGA 171457 | || | | ||| | ||| |||| |||| | || ||||||||||| || || Sbjct 1709 GCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCACAAGA 1651 Query 171458 GGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAA 171517 | | || || ||||| || ||||| || || |||||||| || || || || || || Sbjct 1650 AATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTTAAA 1591 Query 171518 TGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCC 171577 |||||| ||||||| |||||||| | ||| || || |||||||| | || ||||| Sbjct 1590 CGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATTCCC 1531 Query 171578 AGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| ||| |||| ||||| || || |||| || Sbjct 1530 TGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592188436261920