Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq366 147 5e-30 seq1204 107 4e-18 seq12 104 5e-17 seq961 95.1 3e-14 seq825 95.1 3e-14 seq514 84.2 5e-11 >seq366 Length=3905163 Score = 147 bits (162), Expect = 5e-30 Identities = 235/334 (70%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 317568 CAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTGCGATC 317627 || ||| |||||||| |||||||||| || | ||| || || | |||||||||||| || Sbjct 3017202 CACCTTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTC 3017143 Query 317628 GGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACCGACTG 317687 || || ||||||||||| || || || ||| |||||||| ||| || || ||||| Sbjct 3017142 GGTCAGGCCGCGGACGAGCAGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTG 3017083 Query 317688 GACGAATGTGGTCGCCGACAGGTTATGGACGCACTCGGGGACGTC-CTGAGGAGACCCAA 317746 ||||| |||||||||||||| || |||||||| ||||| || || ||| || | || | Sbjct 3017082 CACGAACGTGGTCGCCGACAGCTTGTGGACGCAGTCGGGCACCTCGCTG-GGGGCGCCGA 3017024 Query 317747 TGCTCTTCACGAGATGGGGGATGAAGGGTTCGATGTCTTTGTTATCAAT---TTGACAAC 317803 ||| | || || || | |||||| || ||||| ||| | || || | Sbjct 3017023 TGCAGCGGATCAGGTGCGGCACGAAGGGCTCAATGTCGCGGTTGCCGATGGCGGCGCAGC 3016964 Query 317804 ACGCGATAAGAGCCTTCGTGGCAGCGTCTTTTACCACTTGCTTCAAGTCGAGCATGCAAT 317863 || | | || || | ||||| |||| || |||||| ||| | |||||| | Sbjct 3016963 ACTTGGTGAGCGCGTCGGTGGCGGCGTTGCGCACGGTGGGCTTCAGGTCCACCATGCAGT 3016904 Query 317864 CTGTCACGACAGGGACGATTTCGGGGAGGTACAC 317897 |||||||| || || || ||||| ||||| || Sbjct 3016903 TGGTCACGACCGGCACAATCTCGGGCAGGTAGAC 3016870 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 ||| || |||| || |||||||| ||||||||||| ||||| |||||||| || || | Sbjct 3020573 GTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTT 3020514 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 316286 ||| ||||||||||| |||||||| |||||||| || | |||| || || |||||||| Sbjct 3020513 CTCAATGTGGTGGAAGGCGTGCTGAGCCACGTAGGCCACGCGCAGGTTGGGGTGCTTCCA 3020454 Query 316287 AAC 316289 || Sbjct 3020453 CAC 3020451 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 317056 ATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTT 317115 || || | ||| || || |||||||| || || ||||||||||| || || || || | Sbjct 3018384 ATGGCGCGCATGAGGGTGGACTTGCCGGCGCCGTTGGGGCCGCACAGGCCGTAGCGCTGG 3018325 Query 317116 CCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAG 317175 || |||||| | | |||| ||||||||| || ||||| ||||| || ||||| ||| Sbjct 3018324 CCGCGCTTCAGGTGCAGGCGGGCGTTGTTCAGCAGGATCTTGCCACCGTAGGCCAGGGAG 3018265 Query 317176 AACTCACAATCACACAGGTCCTCGCC 317201 ||||| || | |||||||||||||| Sbjct 3018264 AACTCGCAGTTGCACAGGTCCTCGCC 3018239 Score = 96.9 bits (106), Expect = 7e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 316490 CCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCTTCGTCTCGGCGAGCGTGTAGT 316549 ||||||| |||||||| ||||| | |||| | || | | ||||| || |||||| Sbjct 3019838 CCTCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGT 3019779 Query 316550 AACTTGCAGATTCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCA 316609 | || | ||||| |||| || ||| || | |||||| || || |||||||||| Sbjct 3019778 AGGCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 3019719 Query 316610 GCTTCAGGTTGGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAAT 316669 |||| | |||| ||||| |||||||| || || || || || ||||| ||||| | Sbjct 3019718 GCTTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGT 3019659 Query 316670 CGTGTGATACAATCAC 316685 |||| || || | ||| Sbjct 3019658 CGTGCGACACCACCAC 3019643 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 315664 ACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCC 315723 ||||| || || ||| | | ||| | ||| |||||||| || || |||||||||| Sbjct 3021589 ACCACGCCGCCGCCGTACTCCTTGATGGCCGAGGCCATGGCGCCCAGGGACTCGCGGTCC 3021530 Query 315724 ACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCG 315783 | ||||||| ||||| || || || | || |||||| || ||||| | ||||| || Sbjct 3021529 AGGTAGTTGGTGGGCTCGTCCAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCACCC 3021470 Query 315784 ATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGAT 315824 | || ||||| | || || ||||||||||| || ||||| Sbjct 3021469 AGCACCAGCTTCACCTTCTGGCCACCAGACAGGCCGCGGAT 3021429 >seq1204 Length=1697657 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1370478 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1370537 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||||||||| | || || ||||| || Sbjct 1370538 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGGG 1370597 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 1370598 ATGCCCTCCTTGTCCTG 1370614 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 1369840 CCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1369899 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || ||||||||||| | || || ||||| Sbjct 1369900 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTC 1369952 >seq12 Length=2794402 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 2342311 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2342252 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 2342251 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 2342192 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 2342191 ATGCCCTCCTTGTCCTG 2342175 >seq961 Length=390640 Score = 95.1 bits (104), Expect = 3e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGATT 168813 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | Sbjct 172448 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCCCGTGT 172389 Query 168814 CGTCG 168818 || || Sbjct 172388 CGGCG 172384 >seq825 Length=862972 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 316186 CGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCG 316245 ||||| ||||||||| |||||||||||| || || | ||| | ||||||||| ||| Sbjct 530026 CGCCACCAGATGTACTGCGAGGGCGTCATGTCCAGGTGCTGCTCCACGTGGTGGAAGGCG 530085 Query 316246 TGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACC 316295 ||||| |||||||| || || |||| || || |||||||| ||||| || Sbjct 530086 TGCTGCGCCACGTAGGCGAGCCGCAGGTTGGGGTGCTTCCACACGCTGCC 530135 >seq514 Length=2321867 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | || || || |||||||||||||| || Sbjct 1627207 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1627148 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || || || ||||||| ||| || |||||| Sbjct 1627147 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCA 1627094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046721148328284