Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq1204 114 1e-20 seq514 113 4e-20 seq534 91.5 1e-13 seq557 86.0 6e-12 >seq12 Length=2794402 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||| ||| ||||||||| ||||| ||||| | Sbjct 2342312 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2342253 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 2342252 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 2342193 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 2342192 GATGCCCTCCTTGTCC 2342177 >seq1204 Length=1697657 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||||||| ||||||||| ||||| ||||||| Sbjct 1370477 GCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 1370536 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 1370537 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGG 1370596 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 1370597 GATGCCCTCCTTGTCC 1370612 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||||||| ||||||||| ||||| ||||||| Sbjct 1369839 GCCTCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 1369898 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 1369899 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCGGGGGG 1369958 >seq514 Length=2321867 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||| || ||||||||| ||||| ||||||| Sbjct 1627208 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1627149 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | ||| Sbjct 1627148 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGGGG 1627089 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||| |||||||| |||| || |||||||||||||| || | Sbjct 1624621 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1624562 Query 41733 TCAGGCGCTGTTGGTCCGCGGG 41754 |||| ||||| ||||| | ||| Sbjct 1624561 TCAGACGCTGCTGGTCAGGGGG 1624540 >seq534 Length=2359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| ||||||| | |||||| |||| || |||||||||||||| || | Sbjct 1223 CCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 1164 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 | || ||||| ||||||| ||| | || |||||||||| Sbjct 1163 TGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1126 >seq557 Length=1392758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||| |||||||| |||| || |||||||||||||| || | Sbjct 493081 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 493022 Query 41733 TCAGGCGCTGTTGGTCCGCGGG 41754 | |||||||| ||||| | ||| Sbjct 493021 TGAGGCGCTGCTGGTCGGGGGG 493000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296221735200