Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 159 7e-34 seq17 113 1e-19 seq14 113 1e-19 >seq12 Length=1122692 Score = 159 bits (176), Expect = 7e-34 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 281762 CGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTT 281821 ||||||||| || || || |||| | || ||||||||||| ||| | ||| |||| Sbjct 1064151 CGCGTGGTCCTTCCCGCCTTGCAAACGCGTACCAAACTGACCGCTCGGGACTAACAAGTT 1064210 Query 281822 AATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATAC 281881 ||||| || |||| ||| |||| ||||| || || ||||||||| | ||| || | Sbjct 1064211 GATGTTGTTCGTCCCAACGAAATCTTGAGCGAGATTAACGATTGTCGACGCAAGAGACGC 1064270 Query 281882 CTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCAC 281941 || ||||||||||||||| |||||| | || ||||| || || || || || || | Sbjct 1064271 TTCGCCGTGGTGATAGGCGGAGTGTTCCGAGACGTAACCGCTCAATTGCGCGACTTTGAT 1064330 Query 281942 GTCTGATGTCAAGTTGCGTTTGAAAGCGC-AATATAATACTTTTCGTTGAGAAGGCTTGA 282000 ||| || |||| || | ||| |||| | || | | ||||||||||| |||||||||| Sbjct 1064331 GTCCGACTTCAACTTTCTCTTG-AAGCACGAAAACATAACTTTTCGTTGCGAAGGCTTGA 1064389 Query 282001 AACCATCAACGACAGACGGAAT 282022 ||||||||| | | || ||||| Sbjct 1064390 AACCATCAATGGCGGATGGAAT 1064411 Score = 86.0 bits (94), Expect = 1e-11 Identities = 311/476 (65%), Gaps = 22/476 (5%) Strand=Plus/Plus Query 282395 GATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGA--GACTGGGAAAACAG 282452 ||| || |||||||||| | ||||||||| ||||||| | | ||| ||||| | Sbjct 1064787 GATGGGCGTGATGAACTCCAACAAGAAACCCGGAATTTTCAACAAAGAC-GGGAAGTGCG 1064845 Query 282453 CTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 282512 | || | |||||| || | | ||| ||||| | || || ||| || ||| Sbjct 1064846 CG-TGCAGAAAGTTGATTAACAAACCTTTGATGTGCGAACCATCGTGATCTTGATCCGTC 1064904 Query 282513 ATGATCATCACATGACCGTATCTCAGAGAA------GAAGTGTCTTTGTACACTTTACCG 282566 |||||||||| | ||||||| || | ||| || | |||| ||| ||| Sbjct 1064905 ATGATCATCAACTTCCCGTATCGCAACGTCTTGATGGAATCTTCGTCGTACGTTTTGCCG 1064964 Query 282567 GTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGC- 282625 ||| | ||||||||| ||||||| ||||||||| | || || | |||||| Sbjct 1064965 TGTTGCAAGCCCAAAATCTGTTTGATGTGGGTGATTTCCACATTGTTCTT--TACTTGAT 1065022 Query 282626 CACA-GATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCT 282684 || | || || ||||||||||||| ||||| || | | ||||| || || || | | Sbjct 1065023 CAAACGAAGCGTCGCGAACGTTCAATAACTTCCCTCTCAACGGAAACACCCCGTAGTTGT 1065082 Query 282685 CGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCA 282744 | | ||||| | ||||| || | || || | | | || ||||| ||||| || | Sbjct 1065083 CTCTTCCGACGATGGACAAACCGGAAACCGCCAACGCTTTGGCAGAATCCCCCTCGGTTA 1065142 Query 282745 AGATGAGAGTACACATCTTACTATGATTTGTGCCCGCC--CAT--GCAGCATCGTTTAGT 282800 | || || || || |||| | || ||| | ||||| | | ||||||| | Sbjct 1065143 AAATCAGCGTGCA-GTCTTTC---GAGTTGCGTCCGCCGGCGTTGTTCGCATCGTCCAAC 1065198 Query 282801 TTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCAGTTCCTT 282856 || || || || | || ||| | |||| |||| ||||| ||||||| ||||| Sbjct 1065199 TTCGGAATACCAGTCAATCGCAATCGCTTGACACCATCGGTCTTCTTCAAGTCCTT 1065254 >seq17 Length=937610 Score = 113 bits (124), Expect = 1e-19 Identities = 257/385 (67%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || || |||| || ||||| ||||| ||||| || | |||| ||| Sbjct 352897 CAAGCGTCGACGTCCGAGTTGTACGGTAAAGTGCAAGAGATTCCGCAGTCCGAAACGACG 352838 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--TTGTA 61206 |||||||| || || ||||| | || || ||| | | || ||| ||||| Sbjct 352837 CCGTTTTACCCGCGATCGCCGTACGCGGTCGCGAAATTGATGGGGTATTGGGCCGTTGTA 352778 Query 61207 AAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGA 61266 || ||| | |||||||| | ||||| | || ||| ||||| ||||| ||||| Sbjct 352777 AAC--TACAGAGAGTCGTACGATATGTTCGCGTGCAACGGGATTTTGTTCAACCACGAAT 352720 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 || | ||||| | || || || | |||||||| ||| || || || || Sbjct 352719 CGCCGAGAAGAGGGGAAACTTTCGTCACCAGAAAAATTACTTTGGCCGTGGCGAACATCA 352660 Query 61327 TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 61386 || | |||||||| ||||| | || ||| | ||| | |||||||||||||| Sbjct 352659 AGGCGGGAAACCAAAAATGCTTGTATTTGGGTAACTTGGACGCGCAAAGAGATTGGGGAC 352600 Query 61387 ATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACT 61446 | ||| |||||| ||||| |||||| || || |||||||| || || || | Sbjct 352599 ACGCGAGAGATTACGTCGAGTGCATGTGGAAAATATTACAACAAGACGTACCGGAAGATT 352540 Query 61447 ACGTTATTGCGACTGGACAGACGAC 61471 |||| | |||||||| ||| ||| Sbjct 352539 ACGTGGTCGCGACTGGCGAGATGAC 352515 >seq14 Length=1037991 Score = 113 bits (124), Expect = 1e-19 Identities = 311/469 (66%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 230168 AATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 |||| || ||||| ||| | ||||| | | || || ||||| || | || ||||| Sbjct 66349 AATCCTTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCT 66290 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 ||||||| | |||| ||||| ||| | ||| ||||||| || ||| | || | Sbjct 66289 CTTTCTGCTCAATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCA 66230 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCA 230346 ||||||| ||| | ||||| ||| | || | | || | || |||| | || | Sbjct 66229 ACGAGTTGATCTCCAGAGACGAAGGTTTGCACAGAGATTTTG-CGTGCTTGCTTTACACG 66171 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 | | | | |||| || |||| | | | | | || |||| || || |||||| Sbjct 66170 ATGTTGAACAACACGCCGGGCGAGGAGAAGTTGAGAAAGATTGTTACCGAGGCGGTTGAA 66111 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | || |||||||| | || ||||| | || || ||| || | ||||||||||| || Sbjct 66110 ATTGAGAAGGAGTTTGTGTGCGACGCGTTGCCGTG-CGCGCTCGTCGGCATGAACGCCGA 66052 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA-CTTGGTTACG 230524 | ||| || | |||||||| | ||| ||||| | | || | | ||| || || | | Sbjct 66051 CATGATGAGAGATTACATCGAGTACGTTGCCGATCAC-TTGCTCTCGCAGCTCGGCTTTG 65993 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 ||| | |||| || | |||||| || | | ||||| | ||||| | ||||| | Sbjct 65992 CGAAGGAGTACGACACCGCGAACCCGTTCGACTGGATGGAATTAATTTCTTTGCAAGGCA 65933 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 |||| |||||||| || || |||||| | || || || | | |||| || Sbjct 65932 AGACGAACTTCTTTGAGAAACGTGTCGGCGAGTACCAAAAGTCTGGCGT 65884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823715379230