Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq17 116 6e-21 seq12 93.3 6e-14 seq7 89.7 8e-13 seq16 84.2 3e-11 >seq17 Length=937610 Score = 116 bits (128), Expect = 6e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||| ||||| ||||| || || || || ||||| || | | || || || ||||| Sbjct 351468 GAAAATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGAAA 351409 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||||||||| ||| | ||||| |||| || ||||| |||||||||||||| || ||||| Sbjct 351408 ACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCACCTTGCA 351349 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || || || || Sbjct 351348 CTTGGTCTTGCGTTTGCGCGGCGGCAT 351322 >seq12 Length=1122692 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||||||||| || || || || || || || || || | | ||||| || || || Sbjct 917085 GAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTTTCGCCGGTAA 917026 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| ||||| || | |||| | | ||||| || || |||||||||||||| ||||| Sbjct 917025 ACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAATCAACCTTGCA 916966 Query 124742 TTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || ||||| ||||| || Sbjct 916965 CTTGGTGTTGCGTTTGCGAGGCGG 916942 >seq7 Length=519835 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||| ||||| || ||||| || || ||||| || || || | || || || || || Sbjct 260502 GAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGAA 260443 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| ||||| || | || || || | |||||||| ||||||||||| || || || || Sbjct 260442 ACAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCACGTTACA 260383 Query 124742 TTTGGTTTTACG 124753 ||||| ||||| Sbjct 260382 CTTGGTGTTACG 260371 >seq16 Length=955652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||| || ||||| || |||||||| || || ||||| || | | ||||| || || || Sbjct 707429 GAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAGCAGCGATTGATTTTCGCCGGTAA 707370 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || ||||| || | |||| || | ||||| || || || || || || || ||||| Sbjct 707369 GCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAACATCCAGAAGGAGTCTACGTTGCA 707310 Query 124742 TTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || ||||||||||| || Sbjct 707309 CTTGGTGTTGCGTTTACGAGGCGG 707286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455801692800