Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq12 131 2e-25 seq7 111 2e-19 >seq16 Length=955652 Score = 143 bits (158), Expect = 3e-29 Identities = 181/245 (74%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 42941 TTTATTGTCCTA-TTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTT 42999 ||||||||| | || || |||| ||||||||||||||| ||||| || |||||| | Sbjct 707269 TTTATTGTCTTTCTTCGCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCT 707328 Query 43000 GAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTC 43059 | || |||||||| |||| || | |||| |||| ||||||||| ||||| || | || Sbjct 707329 GGATGTTGTAATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATC 707388 Query 43060 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACC 43118 ||||||| || | ||| | | |||||||| ||| || |||| ||| | | | Sbjct 707389 GCTGCTGATCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATG 707447 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 |||||| || || || || | ||||||||||||||| || | ||||| || |||||| Sbjct 707448 GTGTCGGAAGACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATT 707507 Query 43179 TGCAT 43183 ||||| Sbjct 707508 TGCAT 707512 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| |||||||||||||| ||||| || |||||| || || |||||||| ||| Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| |||| ||||||||| ||||| || | ||||||||| || | ||| Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCGAC 707692 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||||||| || | ||||| || ||||||||||| Sbjct 707693 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| |||||||||||||| ||||| || |||||| || || |||||||| ||| Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | |||| |||| ||||||||| ||||| || | ||||||||| || | ||| Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 707862 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCAAC 707920 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||||||| || | ||||| || ||||||||||| Sbjct 707921 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| |||||||||||||| ||||| || |||||| || || |||||||| ||| Sbjct 707970 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 708029 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | || | |||| |||| ||||||||| ||||| || | ||||||||| || | ||| Sbjct 708030 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGG 708088 >seq12 Length=1122692 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| |||||||||||||| ||||| || || ||||| || |||||||| || Sbjct 916942 CCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCG 917001 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | |||| |||| ||| ||||| ||||| || | |||||||||||| | ||| Sbjct 917002 AGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGA 917061 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| | ||| |||| | || ||| | | | |||||| || || || Sbjct 917062 ATGCCCTCCTTGT-CTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCGAC 917120 Query 43136 ATCGACCGTGATGGTTTTGCCCGT 43159 |||| |||||||||||| || || Sbjct 917121 TTCGAGCGTGATGGTTTTCCCAGT 917144 >seq7 Length=519835 Score = 111 bits (122), Expect = 2e-19 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 || || ||||| | || |||||||| || || ||| ||| |||||||| || ||||| Sbjct 260356 TGCCCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCC 260415 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 |||| ||| || |||| |||| ||| || || ||||| || | ||||||||||| | Sbjct 260416 GCCAAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGA 260475 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTC 43132 || | || |||||||| |||||| |||| ||| | | | ||||| ||||| Sbjct 260476 GGGATGCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGATTC 260534 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGA 43176 ||| || | ||||| ||||||||||| | | |||| ||||| Sbjct 260535 CACTTCCAAGGTGATCGTTTTGCCCGTCA--CTTTTTATAAAGA 260576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817449897880