Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq7 100 2e-16 seq17 84.2 2e-11 >seq16 Length=955652 Score = 104 bits (114), Expect = 2e-17 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 45104 TCTTCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAG 45163 |||||||| |||| || | || |||||||||| ||| ||||||||| |||||||| Sbjct 707280 TCTTCGCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAA 707339 Query 45164 TCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGT 45221 ||| || ||| | |||| || | || || |||||||| ||||| ||||| || | Sbjct 707340 TCGGCCAACGTT--CTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGAT 707397 Query 45222 CGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCAC 45281 | || || | ||| |||||||| || || ||| || | | | |||| | Sbjct 707398 CCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAG 707457 Query 45282 CCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| || |||| || || || ||||| |||| |||||| || ||||||||||| || Sbjct 707458 ACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGC 707517 Query 45342 CTC 45344 ||| Sbjct 707518 CTC 707520 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||||||||| ||| ||||||||| |||||||| ||| | Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| || | || || |||||||| ||||| ||||| || || || | Sbjct 707574 AACGTT--CTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCG 707631 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| || || ||| || | | | |||| | ||| | Sbjct 707632 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGA 707691 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | |||| || || || ||||| |||| |||||| || ||||||||||| ||||| Sbjct 707692 CTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGCCTC 707748 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||||||||| ||| ||||||||| |||||||| ||| | Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| || | || || |||||||| ||||| ||||| || || || | Sbjct 707802 AACGTT--CTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCG 707859 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| || || ||| || | | | |||| | ||| | Sbjct 707860 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAA 707919 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | |||| || || || ||||| |||| |||||| || ||||||||||| ||||| Sbjct 707920 CTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCATCCCGCCTC 707976 >seq7 Length=519835 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | ||| |||||||| | |||| ||| || |||||||| || || | Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| || | ||||| |||||||| ||||||||||| ||||| ||||| Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||||| ||| || | | | ||||| ||||| Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCCACT 260538 Query 45290 TCCACGGTAATCGTCTTGCCCGTCA 45314 |||| ||| ||||| |||||||||| Sbjct 260539 TCCAAGGTGATCGTTTTGCCCGTCA 260563 >seq17 Length=937610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-- 45166 ||| || | ||| | || |||||||||| ||| || || |||||||| |||||| Sbjct 351324 GCCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGC 351383 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | |||| || | || || | ||||||||||||||| ||||| ||||| || || || Sbjct 351384 TAAAGTT--CGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGC 351441 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||| ||||| ||||| ||| || | | ||||| | ||| Sbjct 351442 GGGATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCG 351501 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAG 45315 || || | ||| |||||||||||||| || Sbjct 351502 ACTTCGAGGGTGATCGTCTTGCCCGTGAG 351530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075098885441