Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 242 3e-59 seq7 118 9e-22 seq16 107 2e-18 seq14 100 3e-16 seq12 100 3e-16 seq17 93.3 4e-14 >seq1 Length=1352724 Score = 242 bits (268), Expect = 3e-59 Identities = 798/1227 (65%), Gaps = 20/1227 (2%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| | || || ||||| || || || ||| | || || || || Sbjct 25539 GCGATGGAGGCCAAGTTACAAACGGCAGTTTCTTCCGGCGAGGTGAATTCGACGATCTCT 25598 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || | ||| | || |||||||||||||| ||||| || || |||||| Sbjct 25599 GTGCACAAGTTGGACGATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCAC 25658 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||| | | ||||||||| | || || || || |||| || | ||||| | Sbjct 25659 GCATCCTTGAACAACATGTACGGGTTACCAGTTTCCACTTGCGCTTCAAGAATCGCAAAC 25718 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGGT 23258 || | ||| |||| | |||| | |||| || ||||| |||||||| || Sbjct 25719 CAAAGCTGCTGGGCGTTGA-TCGTC-TTCTTACCCTTGTTTTCTTTTTCGTACTTGGTGT 25776 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 |||| || ||||| || |||| | || |||| || || || | | |||| |||| Sbjct 25777 ACAAAGCTTCAAACTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACA 25836 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | | ||||| | || | ||| || | | |||| || | ||| |||| | | Sbjct 25837 TTAACGTCCACTTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAAC 25896 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 |||| |||| || || || | | | || || || ||| ||||||| ||| || | Sbjct 25897 CGTAAAACAAGTCACGAGCTCTCGCTTCTTCCTTCCCGTGGTTCTTTCGCAAGTCGAGCC 25956 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| || | ||| | |||||||| |||||||||| |||||| |||||| | |||| Sbjct 25957 AGTCGAAGATGTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCGCCCTTGCGCTTAC 26016 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||||| || || ||||| | ||||||| |||| |||| | |||||||| | || || Sbjct 26017 CGCCGCCTTGGTCCACGTACCTCGCCGTGTCGTTGAACACGCGAAGCATCGGAATGATAC 26076 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 |||| || | ||| | ||| | ||| | || || | || ||||| Sbjct 26077 CGTTCGAGGTACCGTTTGTGCCTCTAATGTACGACGAAGTGGCGCGGATGTCGTGAATAG 26136 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 ||||| || || ||| | || || || || |||||||| |||| |||||||||| Sbjct 26137 ACAAACCAATACCGCCGGCGGACTTGGAAATGCACGCGCATTCCTTCAACGTGTCGTAGA 26196 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | || || ||| ||| || || | | ||| || ||||| || | ||||| | | Sbjct 26197 TACCTTCAATGGAGTCTTCCTTCATGCAAATCAAAAAGCACGAGGAGAGTTGCGGTCGCG 26256 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA---TTC-GACATT 23794 ||||| |||| ||||| || || ||||| || ||||| ||| |||| Sbjct 26257 GCGTACCGGCGTTGAACAAGGTTGGCGACGCGTGGGT----CATCCAACGTTCAGACAAC 26312 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 | | ||||| || | || || || |||| ||| |||||||||| || | | Sbjct 26313 ATGTGATACGTATCAACAGCCTTTTCGATATCCTTCTTGTGGATACCGATGGATACTCTC 26372 Query 23855 ATCATCATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 |||| ||||| || || | |||||| | | | |||| || |||| || || | Sbjct 26373 ATCAACATGTGCTGCGGGCGCTCGACAACTTTA--CCGTCGATGCGCAACAAGTACGAGC 26430 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | | || ||||| || ||||| ||||| || | ||||||||| |||| || || ||| Sbjct 26431 GCTCCAAAGTTTTGAAACCAAAGTAGTCGTAATCAAAGTCACGGTCGTAGACAATTTCCG 26490 Query 23973 AATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAATTCGATATCATCGGCG 24032 | || | | |||||| | | |||||| | ||| | || | | || ||| | Sbjct 26491 CGTCAAATCTTTCCGCATTCTCTGTGATGATCTCGTACACATCATCGGCGAGCAACGGGG 26550 Query 24033 TTTTAACGCCG-GTCTTTGGATCGATCGCTTCATACATATCGATAAT-GACATCGAAAAA 24090 |||| ||| ||| ||| | ||| ||||| | | || | | ||| |||| Sbjct 26551 ACCACTTGCCGTTTCTGTGGTTCG-TGTGTTCGTACATCTTCTTCATCGTCGTCG-AAAA 26608 Query 24091 AGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGAATA 24150 ||| | | ||| ||||||||| || || ||||| | || || |||||| || || Sbjct 26609 AGATTTGTCCGTCGTCTTGTGCAAGTTTGAAACGGCGATTCGCGCGGCAAGCTGCGCGTA 26668 Query 24151 GTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGATTGTCCAATTCAGC 24210 || | ||| | | ||||| |||||||| || || || || | ||||||||||| Sbjct 26669 ATCCGGATGCTTGGAAGTCATCGCCGCTGCGGTTTCAGCCGCGAGCTCATCCAATTCAGC 26728 Query 24211 GGTGGTCACGCCCGAATAGATTCCTTG 24237 || |||||||||| || | ||||| Sbjct 26729 AGTCGTCACGCCCGGGTAAACACCTTG 26755 Score = 147 bits (162), Expect = 2e-30 Identities = 338/501 (67%), Gaps = 21/501 (4%) Strand=Plus/Plus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 ||| || ||||||| || || | || || | | ||| | || |||||||| || || Sbjct 24557 GTCGACGGTAAACTTGATCGCATCCGCAGCAGCTCTGGATCTGAGGTAATACATACCAGT 24616 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCA- 22226 ||||| || ||||||||||| || |||| || ||||| || || | | |||| Sbjct 24617 CTTCAATCCAGACTTCCACGCGTGGAAGTGTAAGGAAGTCAACTTACCGGAGTT-GGCAT 24675 Query 22227 -AGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 || | |||| || ||||||||||| ||| ||||||||||| |||||| |||| ||| Sbjct 24676 CAGAC-ATGTGGACGTTGAACGACTGCGACTGGTCGATAAACGCGCCTCGAGCGGCAGCC 24734 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || | | |||| |||| | |||||||| || |||||||| | | |||| | Sbjct 24735 ATGTCCACCAATATACGTTGCTTGATTTCCCACACAGTCTTGTA-AATAGCCT------T 24787 Query 22346 AACGGTATC---GAT-TCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAA---TT 22398 | | |||| ||| |||| | ||| || ||| |||| ||||||| || Sbjct 24788 CAAGTTATCCGGGATGTCGAGGTTGACGACAGAGCCG---TTGTCAGAGATCAAACTGTT 24844 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 || | ||| | |||||| || || |||||||||| | || || |||| || Sbjct 24845 CTTCAACGTTGGATCCCACAAGCCCATCTCGGTCAAATCCGACAACAAGTGCTGGTTGAC 24904 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || || || |||||||| || | | |||||||| ||||| ||||||| || Sbjct 24905 GACGGTGAATTCACCGGACAACACTCTTCTCGCATAAATGTTCGATGTATACGGTTCAAA 24964 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 | || ||||| |||| || || | ||| || ||||| |||||||| || | || || Sbjct 24965 GCACTCGTTGTTACCCAAAATTTGGGAGGTTGACGCGGTTGGCATCGGTGCAACCAAGAG 25024 Query 22579 CGAGTTTCTCAAGCCGTGCTT 22599 ||||| | | ||||||||| Sbjct 25025 GGAGTTGCGAACGCCGTGCTT 25045 >seq7 Length=519835 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||||||||||||| | || || ||| | || |||| |||| | ||||| Sbjct 260563 TGACGGGCAAAACGATCACCTTGGAAGTGGAATCCTCGGACACCATCGACAACGTCAAGG 260504 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || ||| |||||||||||| | || || ||||||||||| | || ||||| || | Sbjct 260503 CGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGGTTGATCTTCGCCGGGA 260444 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 ||||||| |||||| ||| || |||||||||||||||||||| || || | | Sbjct 260443 AACAGTTAGAAGACGGACGCACTTTGGCGGATTATAACATTCAAAAAGAGTCCACGTTAC 260384 Query 31395 ATCTGGTACTTAGACTGAGGGGCGG 31419 | |||| | | ||||| ||||| Sbjct 260383 ACTTGGTGTTACGCCTGAGAGGCGG 260359 >seq16 Length=955652 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| |||||||| ||||| | || ||||| | ||| Sbjct 707968 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCC 707909 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||| | ||||| || ||| Sbjct 707908 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707849 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||||| |||||| | || || |||||| ||| Sbjct 707848 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707789 Query 31373 ATTCAAAAAGAATCGAC 31389 || || || || || || Sbjct 707788 ATCCAGAAGGAGTCTAC 707772 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| |||||||| ||||| | || || || | ||| Sbjct 707512 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707453 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||| | ||||| || ||| Sbjct 707452 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707393 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||||| |||||| | || || |||||| ||| Sbjct 707392 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707333 Query 31373 ATTCAAAAAGAATCGAC 31389 || || || || || || Sbjct 707332 ATCCAGAAGGAGTCTAC 707316 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| |||||||| ||||| | || || || | ||| Sbjct 707740 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707681 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||| | ||||| || ||| Sbjct 707680 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707621 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||||| |||||| | || || |||||| ||| Sbjct 707620 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAGAACGTTGGCCGATTACAAC 707561 Query 31373 ATTCAAAAAGAATCGAC 31389 || || || || || || Sbjct 707560 ATCCAGAAGGAGTCTAC 707544 >seq14 Length=1037991 Score = 100 bits (110), Expect = 3e-16 Identities = 307/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 |||||||| | | ||||||||||| ||||||||| || ||||| || ||| || Sbjct 66344 TTCGCCGAACGTTTGGTCGCGTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCTTTC 66285 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| |||| | ||| | ||||| | ||| ||||||| || || || || |||||| Sbjct 66284 TGCT-CAATCTACTGGCTCAAGAAGAGAGGCATGATGCCGGGGCTCACCTTCTCCAACGA 66226 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 |||||| || | ||||| ||| | || | |||||||||||| | | ||| | || Sbjct 66225 GTTGATCTCCAGAGACGAAGGTTTGCACAGAGATTTTGCGTGCTTGCTTTACAC---GAT 66169 Query 58142 TGTCAATAAACCGACGCGGGATCGCATCTTG---GACATTATCACCGAGGCGGTCGCGAT 58198 | || || || || | || | ||| | ||| | ||||||||||| | || Sbjct 66168 GTTGAACAACACGCCGGGCGAGGAGAAGTTGAGAAAGATTGTTACCGAGGCGGTTGAAAT 66109 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 || || |||||||| ||| || | ||| || | |||| |||||| || | Sbjct 66108 TGAGAAGGAGTTTGTGTGCGACGCGTTGCCGTGCGCGCTCGTCGGCATGAACGCCGACAT 66049 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA---CTGATTGGAGA 58315 |||| | | ||||| |||| |||||||| |||| |||| | | | || | || Sbjct 66048 GATGAGAGATTACATCGAGTACGTTGCCGA-TCACTTGCTCTCGCAGCTCGGCTTTGCGA 65990 Query 58316 GCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAA 58375 | | ||| |||| || ||||| || | ||| | | || || | | ||||| Sbjct 65989 AGG--AGTACGACACCGCGAACCCGTTCGACTGGATGGAATTAATTTCTTTGCAAGGCAA 65932 Query 58376 GACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGT 58423 ||| ||||| || || ||| || |||| || ||||| | ||||| Sbjct 65931 GACGAACTTCTTTGAGAAACGTGTCGGCGAGTACCAAAAGTCTGGCGT 65884 >seq12 Length=1122692 Score = 100 bits (110), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 ||||| ||| |||| || ||||| ||||| |||| || || | || |||| |||| Sbjct 917155 GTAAA-ACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGAC 917097 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | || ||| || ||| |||||||| ||| | ||||| ||||||||||| | || Sbjct 917096 AACGTGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATT 917037 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 ||||| || |||||||| |||||| | ||| | ||||| ||||| ||||||||| Sbjct 917036 TTCGCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAA 916977 Query 31385 TCGAC 31389 || || Sbjct 916976 TCAAC 916972 >seq17 Length=937610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| ||||||||| |||| || || | || |||| | |||| | ||||| Sbjct 351530 CTCACGGGCAAGACGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAG 351471 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || ||| ||||| || ||| | ||||| || |||||||| | || ||||| || Sbjct 351470 GCGAAAATCCAAGACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGA 351411 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGAC 31389 ||||| || ||||| ||| | ||| |||||||||||||||||||| || Sbjct 351410 AAACAATTAGAAGATGGCCGAACTTTAGCCGACTATAACATTCAAAAAGAATCCAC 351355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766282986320