Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq12 105 7e-18 seq16 96.9 4e-15 seq1 86.0 6e-12 >seq12 Length=1122692 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| |||||||| || || || | || ||||||||||| ||||||||||| Sbjct 916941 GCCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGC 917000 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| |||||| | |||||||| || | |||| || ||||| || || || Sbjct 917001 GAGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGG 917060 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| |||||| ||| | | || | |||||||| || || || Sbjct 917061 AATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCGAC 917120 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 143169 ||| | || | || || || ||||| ||||| Sbjct 917121 TTCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq16 Length=955652 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||||||||||||| || || || | ||||| || || || |||||||||||| Sbjct 707285 GCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGC 707344 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || |||||| | || ||||| || | |||| || |||||||| || || Sbjct 707345 CAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGG 707404 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 707405 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 707464 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || ||||| ||||| || || ||||| |||||||| Sbjct 707465 TTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||||| || || || | ||||| || || || |||||||||||| | Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | || ||||| || | |||| || |||||||| || || Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACT 707693 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 707694 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||||| || || || | ||||| || || || |||||||||||| | Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | || ||||| || | |||| || |||||||| || || Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 707862 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCAACT 707921 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 707922 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 >seq1 Length=1352724 Score = 86.0 bits (94), Expect = 6e-12 Identities = 353/549 (64%), Gaps = 17/549 (3%) Strand=Plus/Plus Query 157070 TTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTG 157129 ||||| ||||||||||| || |||| | ||| || || || | ||||| ||| Sbjct 25554 TTACAAACGGCAGTTTCTTCCGGCGAGGTGAATTCGACGATCTCTGTGCACAAGTTGGAC 25613 Query 157130 CATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAAC 157189 |||| ||| || |||| ||| || ||||||||||| || |||||| | ||| Sbjct 25614 GATTTGATCGTGCCCAAATTTTGTTGGTTCGACTTGCGGTTGCACGCATCCTTGAACAAC 25673 Query 157190 ATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACC-GC 157248 |||||||| | || ||||| |||| ||| | || |||| || || | || Sbjct 25674 ATGTACGGGTTACCAGTTTCCACTTGCGCTTCAAGAAT----CGCA--AACCAAAGCTGC 25727 Query 157249 GGGCATTTGCTCGCGAAACTGGCCTT--TATCCT---CGTAATGTTTGTACCAGTATTCA 157303 || ||| ||| | |||| | || | |||| | ||||| | |||| Sbjct 25728 TGGGCGTTGATCGTCTTCTTACCCTTGTTTTCTTTTTCGTACTTGGTGTACAAAGCTTCA 25787 Query 157304 AAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCAT 157363 || || ||||| | ||| | || |||||||| || |||||||| | ||| Sbjct 25788 AACTCTTCACCCCAGCATTCGGACAAACCCGGGCACTCGTTCGGGCACATTAACGTCCAC 25847 Query 157364 ATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAA 157423 | ||||||||||| || | |||||| || | |||| ||| ||| ||| | ||| Sbjct 25848 TTGCCGTTTTCTTCGACTCTTTTCATGAACAAATCGTTCGTCCACAAACCGTAAAACAAG 25907 Query 157424 TCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTC-GACGCATGTGTAAAACGTCCATAAT 157482 ||||| ||| | | ||||| || || || ||| |||| || | ||| | || Sbjct 25908 TCACGAGCTCTCGCTTCTTC-CTTCCCGTGGTTCTTTCGCAAGTCGAGCCAGTCGAAGAT 25966 Query 157483 GTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTG 157539 ||| | ||||||||||| | ||| | || || || || ||||| ||| ||||| Sbjct 25967 GTCAGAGTGCCACGGTTCGAGGTAAATGGCAAAAGCGCCCTTGCGCTTACCGCCGCCTTG 26026 Query 157540 ATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGT 157599 ||||||| | | || | | || || || || ||||| || | | ||| | | ||| Sbjct 26027 GTCCACGTACCTCGCCGTGTCGTTGAACACGCGAAGCATCGGAATGATACCGTTCGAGGT 26086 Query 157600 GCCGTTCGT 157608 ||||| || Sbjct 26087 ACCGTTTGT 26095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014266908720