Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 3e-13 seq7 84.2 1e-11 >seq16 Length=955652 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 33137 TCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAA 33196 ||||| ||||||| ||| ||||||||||| ||||| || ||||| || || || |||||| Sbjct 707280 TCTTCGCCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAA 707339 Query 33197 TCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 || | ||| | ||| || || ||||| || || || || || ||||| ||| Sbjct 707340 TCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCC 707399 Query 33257 GTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || || ||||| || || | | ||||| || || | | || |||||| Sbjct 707400 GGCGGGATACCTTCCTTGTCTTGGATCTTCGCC---TTGACGTTGTCGATGGTGTCGGAA 707456 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || |||| || || ||||| || || | ||| || ||||| |||||||| Sbjct 707457 GACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| || ||||||||||| ||||| || ||||| || || || |||||||| | | Sbjct 707742 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707801 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | ||| || || ||||| || || || || || ||||| |||| || Sbjct 707802 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707861 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | ||||| || || | | || |||||| | | | Sbjct 707862 ATACCTTCCTTGTCTTGGATCTTCGCC---TTGACGTTGTCGATGGTGTCGGAAGACTCA 707918 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || ||||| || || | ||| || ||||| |||||||| Sbjct 707919 ACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| || ||||||||||| ||||| || ||||| || || || |||||||| | | Sbjct 707514 CCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707573 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | ||| || || ||||| || || || || || ||||| |||| || Sbjct 707574 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707633 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | ||||| || || | | || |||||| | | Sbjct 707634 ATACCTTCCTTGTCTTGGATCTTCGCC---TTGACGTTGTCGATGGTGTCGGAAGACTCG 707690 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || ||||| || || | ||| || ||||| |||||||| Sbjct 707691 ACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 >seq7 Length=519835 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | || |||||||| || || || ||||||||||| || || ||||| | | Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| || || ||| || || || || || || || || || |||||||| | || Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || | | ||||| || || | | || ||||| || || Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCC---TTGACGTTGTCGATGGTGTCCGAGGATTCC 260535 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGT 33345 || |||| || |||||||| ||||| Sbjct 260536 ACTTCCAAGGTGATCGTTTTGCCCGT 260561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777518412858