Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16 149 6e-31 seq12 125 6e-24 seq17 114 1e-20 seq7 105 6e-18 >seq16 Length=955652 Score = 149 bits (164), Expect = 6e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| ||||||||||||||||| ||||| ||||| || | ||| | Sbjct 707506 TTTGCATCCCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGT 707565 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || || || || || | ||| || ||| | || || |||| ||||||| Sbjct 707566 AATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGAT 707625 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || |||||||| ||||| | || || ||||||||| | ||| ||||| | Sbjct 707626 CCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAG 707685 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||||||| ||||| | ||| || || ||||| ||||| Sbjct 707686 ACTCGACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707740 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| ||||||||||||||||| ||||| ||||| || | ||| | Sbjct 707734 TTTGCATCCCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGT 707793 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || || || || || | ||| || ||| | || || |||| ||||||| Sbjct 707794 AATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGAT 707853 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || |||||||| ||||| | || || ||||||||| | ||| ||||| | Sbjct 707854 CCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAG 707913 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||||||| ||||| | ||| || || ||||| ||||| Sbjct 707914 ACTCAACTTCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707968 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || ||||||||||||||||| ||||| ||||| || | ||| |||||| | Sbjct 707286 CCGCCTCGTAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAATCGGCC 707345 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || || || | ||| || ||| | || || |||| |||||||| || || Sbjct 707346 AACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGATCCGGCGGG 707405 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || ||||||||| | ||| ||||| | ||||| Sbjct 707406 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACT 707465 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||||||| ||||| | ||| || || ||||| ||||| Sbjct 707466 TCCAACGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 707512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| ||||||||||||||||| ||||| ||||| || | ||| | Sbjct 707962 TTTGCATCCCGCCTCTCAAACGCAACACCAAGTGCAACGTAGACTCCTTCTGGATGTTGT 708021 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || || || || || | ||| || ||| | || || |||| ||||||| Sbjct 708022 AATCGGCCAACGTTCTGCCGTCTTCTAACTGCTTACCGGCGAAAATCAATCGCTGCTGAT 708081 Query 94893 CTGGAGGAATACCT 94906 | || ||||| ||| Sbjct 708082 CCGGCGGAATTCCT 708095 >seq12 Length=1122692 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| ||||||||||||||||| || ||||| ||||| | ||| ||||| Sbjct 916942 CCGCCTCGCAAACGCAACACCAAGTGCAAGGTTGATTCTTTTTGGATGTTGTAATCCGCG 917001 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || || | |||||| ||| | || || |||| ||||| || || ||| Sbjct 917002 AGAGTTCTCCCGTCTTCTAACTGTTTACCGGCGAAAATCAATCGCTGCTGGTCCGGCGGA 917061 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | |||||| || || ||| | ||| ||||| | | ||||| Sbjct 917062 ATGCCCTCCTTGTCTTGAATTTTCGCTTTCACGTTGTCGATCGTGTCCGAGGACTCGACT 917121 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTT 94992 || | |||||||||||| ||||| | |||||| Sbjct 917122 TCGAGCGTGATGGTTTTCCCAGTCAAAGTTTT 917153 >seq17 Length=937610 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| ||||| ||||||||||| || ||||| ||||| | |||||| ||| Sbjct 351325 CCGCCGCGCAAACGCAAGACCAAGTGCAAGGTGGATTCTTTTTGAATGTTATAGTCGGCT 351384 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | ||||||||| | ||||| |||| |||||||| || || Sbjct 351385 AAAGTTCGGCCATCTTCTAATTGTTTTCCGGCGAAGATCAATCGCTGCTGATCCGGCGGG 351444 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||||||| | ||| |||||| | ||||| Sbjct 351445 ATGCCCTCTTTGTCTTGGATTTTCGCCTTGACGTTGTCGATAGTGTCCGAAGACTCGACT 351504 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAG 94986 || | ||||| || || || || || Sbjct 351505 TCGAGGGTGATCGTCTTGCCCGTGAG 351530 >seq7 Length=519835 Score = 105 bits (116), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || ||||||||||| || || || || ||||| | ||||||||| | Sbjct 260359 CCGCCTCTCAGGCGTAACACCAAGTGTAACGTGGACTCTTTTTGAATGTTATAATCCGCC 260418 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| || || | |||||| ||| | ||||| || | ||||| || ||||| Sbjct 260419 AAAGTGCGTCCGTCTTCTAACTGTTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGAGGG 260478 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | ||||| ||||||||| | ||| ||||| | | || || Sbjct 260479 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACGTTGTCGATGGTGTCCGAGGATTCCACT 260538 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 || | ||||| ||||| || || | |||| | ||||| Sbjct 260539 TCCAAGGTGATCGTTTTGCCCGT--CACTTTTTATAAAGA 260576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291082323560