Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13 154 2e-33 seq5 154 2e-33 >seq13 Length=1091008 Score = 154 bits (170), Expect = 2e-33 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || ||||||||| |||| | |||||||| | Sbjct 858033 GAGACAACATCCAAGGCATCACGAAGCCGGCGATCCGTCGTTTGGCAAGACGTGGTGGCG 858092 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | ||||||| || |||| ||||| | | | ||| |||||| | ||| | Sbjct 858093 TCAAGAGAATCTCTGGTTTAATCTACGAAGAAACCAGAGGTGTCTTGAAGGTGTTCTTGG 858152 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||||| |||||| | || ||||| ||||| | | | ||||| |||||| Sbjct 858153 AAAACGTTATCCGTGATGCGGTTACGTACACCGAACACGCCAGAAGAAAGACGGTCACCG 858212 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| ||||||| || ||||| | |||||| Sbjct 858213 CCATGGATGTCGTCTACGCGTTGAAGAGACAAGGC 858247 >seq5 Length=708035 Score = 154 bits (170), Expect = 2e-33 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || ||||||||| |||| | |||||||| | Sbjct 233624 GAGACAACATCCAAGGCATCACGAAGCCGGCGATCCGTCGTTTGGCGAGACGTGGTGGCG 233565 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | ||||||| || |||| ||||| | | | ||| |||||| | ||| | Sbjct 233564 TCAAGAGAATCTCTGGTTTAATCTACGAAGAAACCAGAGGTGTCTTGAAGGTGTTCTTGG 233505 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||||| |||||| | || ||||| ||||| | | | ||||| |||||| Sbjct 233504 AAAACGTTATCCGTGATGCGGTGACGTACACCGAACACGCCAGAAGAAAGACGGTCACCG 233445 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| ||||||| || ||||| | |||||| Sbjct 233444 CCATGGATGTCGTCTACGCGTTGAAGAGACAAGGC 233410 Score = 154 bits (170), Expect = 2e-33 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || ||||||||| |||| | |||||||| | Sbjct 241218 GAGACAACATCCAAGGCATCACGAAGCCGGCGATCCGTCGTTTGGCGAGACGTGGTGGCG 241277 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | ||||||| || |||| ||||| | | | ||| |||||| | ||| | Sbjct 241278 TCAAGAGAATCTCTGGTTTAATCTACGAAGAAACCAGAGGTGTCTTGAAGGTGTTCTTGG 241337 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | |||||||| |||||| | || ||||| ||||| | | | ||||| |||||| Sbjct 241338 AAAACGTTATCCGTGATGCGGTGACGTACACCGAACACGCCAGAAGAAAGACGGTCACCG 241397 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| ||||||| || ||||| | |||||| Sbjct 241398 CCATGGATGTCGTCTACGCGTTGAAGAGACAAGGC 241432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075180799553