Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq21 731 0.0 >seq21 Length=72700 Score = 731 bits (810), Expect = 0.0 Identities = 765/999 (77%), Gaps = 7/999 (1%) Strand=Plus/Minus Query 170658 GGGACGAGTTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTG 170717 |||||| |||||| ||| | || || ||||| || || | ||| | || ||||| | Sbjct 54073 GGGACGT-TTTTGTTCATGGATCACTTCAACTGAGAACCGTTTATACATCGGATGGTTCG 54015 Query 170718 GTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCG 170777 |||| ||||||||||| | |||| ||| || || ||||| ||||||||||||| Sbjct 54014 GTGTATTAATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCGTAGCATTCATCG 53955 Query 170778 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 170837 | ||||||||||| || ||||| || || | || ||||| | || || | | || | Sbjct 53954 CAGCTCCTCCAGTGGACATCGATGGTATTCGTGAGCCAGTATCTGGATCACTTATGTACG 53895 Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897 | ||||||||||||||||||||||||||||| | |||||||| || ||| | ||||||| Sbjct 53894 GAAACAACATCATCTCTGGTGCTGTAGTTCCTACATCAAACGCTATCGGACTTCACTTCT 53835 Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957 | || |||||||||||||| || | || |||||| | |||||||| || ||||||||| Sbjct 53834 ACCCAATCTGGGAAGCAGCTACACTTGATGAGTGGCTTTACAACGGTGGACCTTACCAGC 53775 Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017 | | | | |||||| | || ||| | | | | ||||||||| | ||||||| || | Sbjct 53774 TTATCGTATGTCACTTCTTCATCGGAGTATGTTCATACATGGGTCGTGAGTGGGAGCTTT 53715 Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077 ||| | | |||||||| | |||||||| |||||| ||||| || |||||| | || | Sbjct 53714 CATTCCGTTTAGGAATGCGTCCTTGGATCGCTGTAGCTTACTCTGCTCCTGTAGCAGCTG 53655 Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137 || |||||||||| | | || ||| |||| ||||| || |||||||| |||||||| | Sbjct 53654 CAACTGCAGTATTCATCATTTACCCAATCGGACAGGGATCTTTCTCTGACGGTATGCCTC 53595 Query 171138 TAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAA 171197 | ||||| || || || |||||||||||| |||| ||||| || || |||||||| || | Sbjct 53594 TTGGTATTTCTGGAACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAACATCCTTA 53535 Query 171198 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 171257 ||||||| ||||| ||| || ||||| ||| | ||||||||| || ||| ||| | Sbjct 53534 TGCACCCATTCCACATGCTTGGAGTAGCTGGTGTATTCGGTGGTTCACTTTTCTCTGCTA 53475 Query 171258 TGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA-- 171315 |||||||||| || || || ||||| || ||| | || || ||||||||| || ||| Sbjct 53474 TGCACGGTTCACTCGTAACTTCTTCACTTATCCGTGAAACTACTGAGAAC--GAATCAGC 53417 Query 171316 AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGG 171375 ||| || || |||||||||||||||||||| || || |||||||| |||||||| || Sbjct 53416 TAACGCAGGATACAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTAGCTGCTCACGG 53357 Query 171376 ATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTT 171435 |||||||| | | |||||||| || || |||||||||||||| |||||| | ||||| Sbjct 53356 TTACTTCGGACGTCTTATCTTCCAATACGCTTCATTCAACAACTCACGTTCACTCCACTT 53297 Query 171436 CTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAAT 171495 |||||||||| | | |||||| | | | ||||| || || | ||||| | ||| || Sbjct 53296 CTTCCTCGCTATCTGGCCTGTAATGGGAATCTGGTTCACAGCTCTTGGTATTTCTACTAT 53237 Query 171496 GGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGAT 171555 ||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||| | | Sbjct 53236 GGCTTTCAACCTTAACGGATTCAACTTCAACCAGTCAGTGGTAGATTCAAACGG-ACGTG 53178 Query 171556 TGTACCA-ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATG 171614 || | | ||||||| ||| || | ||| | || |||||||| |||||||| ||||| | Sbjct 53177 TGATCAACACATGGGCTGATATTGTAAACCGTGCTAACCTTGGTATGGAAGTAATGCACG 53118 Query 171615 AAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTG 171653 | | || || |||||||||||||| ||||| ||||||| Sbjct 53117 AGCGTAACGCTCACAACTTCCCACTTGACCTCGCATCTG 53079 Score = 542 bits (600), Expect = 3e-149 Identities = 742/1033 (72%), Gaps = 35/1033 (3%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| ||| | ||| | || |||||||||||| | || |||||||| |||||| | || Sbjct 62470 GATGACTGGCTTAAGCGTGACCGTTTCGTATTCGTAGGTTGGTCTGGACTTTTATTATTC 62411 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 || ||||| ||| | ||| | || || ||| | ||||| || ||||| || |||||| Sbjct 62410 CCATGTGCATACTTTGCACTTGGTGGATGGCTTACTGGAACAACATTCGTAACTTCATGG 62351 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 |||||||| ||| | ||| ||||| ||||| || ||||| | ||| |||||||| Sbjct 62350 TACACACACGGTTTAGCAAGTTCATACCTTGAAGGGTGTAACTTCCTCACTTCAGCAGTA 62291 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC--CTATGGGGACCTGAGGCAC 172044 ||||| || | || |||| || | || || ||| || |||||||| || |||| Sbjct 62290 TCAACGCCATCAAACGCGATGG--CACACTCACTTCTTCTCCTTTGGGGACCAGAAGCAC 62233 Query 172045 AAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATG 172104 |||| || | ||| |||| |||| | |||||| |||||| || ||||| | || | Sbjct 62232 AAGGTGACTTCACACGTTGGTGTCAACTTGGTGGATTATGGACATTCGTAGCTCTTCACG 62173 Query 172105 GAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGA 172164 ||| |||||| | || || || |||||| | || ||||| ||||| | || | Sbjct 62172 GAGCATTTGGATTAATCGGATTTATGCTTCGTCAATTTGAAATTGCTCGTGCAGTACAAA 62113 Query 172165 TACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTT- 172223 | ||||| |||||||| | |||||||||||| ||||| || || | |||| | Sbjct 62112 TTCGTCCATACAACGCGATTGCATTCTCAGCACCAATTGCTGTGTTT----GTATCTGTA 62057 Query 172224 ---CTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 || || || ||| | || || |||||||||| ||||| ||||||||||| || Sbjct 62056 TTCCTTATTTACCCACTTGGGCAATCAGGTTGGTTCTTTGCACCATCATTTGGTGTAGCT 61997 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 172340 | ||| || |||| |||| | ||| | || ||||||||||| || ||||| ||||| Sbjct 61996 GGAATTTTCCGTTTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTC 61937 Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 || |||||||| ||||| ||| |||| |||| |||| | || ||||| || || || ||| Sbjct 61936 CACATGATGGGAGTAGCTGGTGTACTCGGTGCAGCACTTCTTTGTGCAATTCACGGAGCA 61877 Query 172401 ACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCT 172460 || ||| |||||||| | | ||||| || | | | ||||| | Sbjct 61876 ACTGTAGAGAACACACTTTTCGAAGA---------------TG--GTGATGGTTCAAAC- 61835 Query 172461 ACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCT 172520 || ||| | |||||| | || || || | |||||| ||||| ||| | || ||| Sbjct 61834 ---ACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAGACTTACTCAATGGTAACGGCT 61778 Query 172521 AACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTC 172580 ||| | |||||||||||||| || ||| |||| || |||||||| | | | |||||| Sbjct 61777 AACCGTTTCTGGTCACAGATTTTCGGTGTAGCTTTCTCAAACAAGCGTTGGCTTCACTTC 61718 Query 172581 CTTATGTTGTTCGTACCTGTCA-TGGGTATGTGGACATCATCTATAGGTATCGTAGGTCT 172639 | ||| | ||||||||||| | ||||| | |||| ||| | | || | ||||| | Sbjct 61717 TTCATGCTCTTCGTACCTGTTACTGGGT-TATGGATGTCAGCACTTGGAGTAGTAGGATT 61659 Query 172640 TGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCC 172699 |||||||||||| | ||||||||||| ||||| |||||||| | || |||||||| || Sbjct 61658 AGCACTTAACCTCCGTGCATACGACTTCGTATCACAAGAGATCCGTGCTGCAGAAGATCC 61599 Query 172700 AGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGAT 172759 ||||| ||||| |||||||| ||||||||||||||||| ||||| || | |||||||| Sbjct 61598 TGAGTTCGAAACATTCTACACGAAGAACATTCTTCTTAACGAAGGAATCCGTGCATGGAT 61539 Query 172760 GTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGG 172819 | || || ||||| || ||||| ||| |||| ||||| || || || | ||||| || Sbjct 61538 GGCAGCTCAAGATCAGCCTCATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGG 61479 Query 172820 CAACGCACTATAA 172832 ||||| || ||| Sbjct 61478 AAACGCTCTTTAA 61466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268650304440