Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq16 120 3e-22 seq12 104 2e-17 seq17 100 2e-16 seq7 93.3 4e-14 >seq16 Length=955652 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| ||| | || || | ||||||||| | | Sbjct 707740 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707681 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 707680 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707621 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATAA 24169 ||| || |||||| || ||| ||||| | ||||| | ||| ||||| | |||||| || Sbjct 707620 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAG-AACGTTGGCCGATTACAA 707562 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || ||||| | || || ||||| | |||||||| || Sbjct 707561 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707514 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| ||| | || || | ||||| ||| | | Sbjct 707968 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTTGAGTCTTCC 707909 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 707908 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707849 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATAA 24169 ||| || |||||| || ||| ||||| | ||||| | ||| ||||| | |||||| || Sbjct 707848 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAG-AACGTTGGCCGATTACAA 707790 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || ||||| | || || ||||| | |||||||| || Sbjct 707789 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTTGCGTTTGAGAGGCGG 707742 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| ||| | || || | ||||||||| | | Sbjct 707512 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATCACGTTGGAAGTCGAGTCTTCC 707453 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 707452 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGATCAG 707393 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATAA 24169 ||| || |||||| || ||| ||||| | ||||| | ||| ||||| | |||||| || Sbjct 707392 CAGCGATTGATTTTCGCCGGTAAGCAGTTAGAAGACGGCAG-AACGTTGGCCGATTACAA 707334 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || ||||| | || || ||||| Sbjct 707333 CATCCAGAAGGAGTCTACGTTGCACTTGGTGTT 707301 >seq12 Length=1122692 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAA 24065 ||||| || ||||| ||| | || || ||||||||||| || ||||| ||||| | Sbjct 917153 AAAACTTTGACTGGGAAAACCATCACGCTCGAAGTCGAGTCCTCGGACACGATCGACAAC 917094 Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 || ||| || ||| ||||| || ||||| || || || || ||| || |||||| | Sbjct 917093 GTGAAAGCGAAAATTCAAGACAAGGAGGGCATTCCGCCGGACCAGCAGCGATTGATTTTC 917034 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | ||| || || | ||||| | |||| || ||||| ||||| ||||||||||| Sbjct 917033 GCCGGTAAACAGTTAGAAGACGGGAGAACTCTCGCGGATTACAACATCCAAAAAGAATCA 916974 Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || | || || ||||| | ||| |||| || Sbjct 916973 ACCTTGCACTTGGTGTTGCGTTTGCGAGGCGG 916942 >seq17 Length=937610 Score = 100 bits (110), Expect = 2e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| ||||||||||| | ||||| ||||| | ||||| || || | Sbjct 351517 CGATCACCCTCGAAGTCGAGTCTTCGGACACTATCGACAACGTCAAGGCGAAAATCCAAG 351458 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 ||||||| ||||| || || ||||| ||| || |||| | || ||| || ||| | |||| Sbjct 351457 ACAAAGAGGGCATCCCGCCGGATCAGCAGCGATTGATCTTCGCCGGAAAACAATTAGAAG 351398 Query 24145 ATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTAC 24187 ||| | ||| | | ||| || |||||||||||||||||||| || Sbjct 351397 ATGGCCGAA-CTTTAGCCGACTATAACATTCAAAAAGAATCCAC 351355 >seq7 Length=519835 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 23985 AACAAAATGCAAG-TGTT-TGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 |||||||| || | |||| | || ||| | | || || ||| |||| ||| | ||||| | Sbjct 260592 AACAAAAT-CACGATGTTCTTTATAAAAAGTGACGGGCAAAACGATCACCTTGGAAGTGG 260534 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | || ||||||||||| | ||||| || || ||||| |||||||| |||| Sbjct 260533 AATCCTCGGACACCATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGCATCCCTC 260474 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC- 24161 | || || ||| | |||| | || ||| || || | ||||| | | || | || Sbjct 260473 CTGACCAGCAGCGGTTGATCTTCGCCGGGAAACAGTTAGAAGACG-GACGCACTTTGGCG 260415 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||||||||| || || | || || |||||| | ||||||| || Sbjct 260414 GATTATAACATTCAAAAAGAGTCCACGTTACACTTGGTGTTACGCCTGAGAGGCGG 260359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935889963255